{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# V4 Digital Twins"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Set Up + Imports"
]
},
{
"cell_type": "code",
"execution_count": 1,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"Working directory: /home/facosta/neurometry/neurometry\n",
"Directory added to path: /home/facosta/neurometry\n",
"Directory added to path: /home/facosta/neurometry/neurometry\n"
]
},
{
"data": {
"text/html": [
"\n",
" \n",
" "
],
"text/plain": [
""
]
},
"metadata": {},
"output_type": "display_data"
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"2024-09-04 17:05:46.580091: I tensorflow/core/platform/cpu_feature_guard.cc:210] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations.\n",
"To enable the following instructions: AVX2 FMA, in other operations, rebuild TensorFlow with the appropriate compiler flags.\n",
"2024-09-04 17:05:47.357973: W tensorflow/compiler/tf2tensorrt/utils/py_utils.cc:38] TF-TRT Warning: Could not find TensorRT\n"
]
}
],
"source": [
"import setup\n",
"\n",
"setup.main()\n",
"%load_ext autoreload\n",
"%autoreload 2\n",
"%load_ext jupyter_black\n",
"\n",
"import torch\n",
"import os\n",
"from nnvision.models.ptrmodels import task_core_gauss_readout\n",
"from mei.modules import EnsembleModel"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Load model"
]
},
{
"cell_type": "code",
"execution_count": 2,
"metadata": {},
"outputs": [],
"source": [
"weights_path = os.path.join(os.getcwd(), \"datasets/digital_twins/weights\")"
]
},
{
"cell_type": "code",
"execution_count": 3,
"metadata": {},
"outputs": [],
"source": [
"def load_v4_model_from_weights(base_dir):\n",
" model_fn = task_core_gauss_readout\n",
" model_config = {\n",
" \"input_channels\": 1,\n",
" \"model_name\": \"resnet50_l2_eps0_1\",\n",
" \"layer_name\": \"layer3.0\",\n",
" \"pretrained\": False,\n",
" \"bias\": False,\n",
" \"final_batchnorm\": True,\n",
" \"final_nonlinearity\": True,\n",
" \"momentum\": 0.1,\n",
" \"fine_tune\": False,\n",
" \"init_mu_range\": 0.4,\n",
" \"init_sigma_range\": 0.6,\n",
" \"readout_bias\": True,\n",
" \"gamma_readout\": 3.0,\n",
" \"gauss_type\": \"isotropic\",\n",
" \"elu_offset\": -1,\n",
" }\n",
"\n",
" data_info = {\n",
" \"all_sessions\": {\n",
" \"input_dimensions\": torch.Size([64, 1, 100, 100]),\n",
" \"input_channels\": 1,\n",
" \"output_dimension\": 1244,\n",
" \"img_mean\": 124.54466,\n",
" \"img_std\": 70.28,\n",
" },\n",
" }\n",
"\n",
" # fill the list ensemble names with task driven 01 - 10\n",
" ensemble_names = [\n",
" \"task_driven_ensemble_model_01.pth.tar\",\n",
" \"task_driven_ensemble_model_02.pth.tar\",\n",
" \"task_driven_ensemble_model_03.pth.tar\",\n",
" \"task_driven_ensemble_model_04.pth.tar\",\n",
" \"task_driven_ensemble_model_05.pth.tar\",\n",
" ]\n",
"\n",
" ensemble_models = []\n",
"\n",
" for f in ensemble_names:\n",
" ensemble_filename = os.path.join(base_dir, f)\n",
" ensemble_state_dict = torch.load(ensemble_filename)\n",
" ensemble_model = model_fn(\n",
" seed=0,\n",
" dataloaders=None,\n",
" **model_config,\n",
" data_info=data_info,\n",
" )\n",
" ensemble_model.load_state_dict(ensemble_state_dict)\n",
" ensemble_models.append(ensemble_model)\n",
"\n",
" task_driven_ensemble = EnsembleModel(*ensemble_models)\n",
" return task_driven_ensemble"
]
},
{
"cell_type": "code",
"execution_count": 4,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"EnsembleModel(EncoderShifter(\n",
" (core): TaskDrivenCore3(\n",
" (features): Sequential(\n",
" (TaskDriven): Sequential(\n",
" (conv1): Conv2d(3, 64, kernel_size=(7, 7), stride=(2, 2), padding=(3, 3), bias=False)\n",
" (bn1): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" (maxpool): MaxPool2d(kernel_size=3, stride=2, padding=1, dilation=1, ceil_mode=False)\n",
" (layer1): Sequential(\n",
" (0): Bottleneck(\n",
" (conv1): Conv2d(64, 64, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(64, 64, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(64, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" (downsample): Sequential(\n",
" (0): Conv2d(64, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (1): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" )\n",
" )\n",
" (1): Bottleneck(\n",
" (conv1): Conv2d(256, 64, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(64, 64, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(64, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" )\n",
" (2): Bottleneck(\n",
" (conv1): Conv2d(256, 64, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(64, 64, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(64, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" )\n",
" )\n",
" (layer2): Sequential(\n",
" (0): Bottleneck(\n",
" (conv1): Conv2d(256, 128, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(128, 128, kernel_size=(3, 3), stride=(2, 2), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(128, 512, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(512, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" (downsample): Sequential(\n",
" (0): Conv2d(256, 512, kernel_size=(1, 1), stride=(2, 2), bias=False)\n",
" (1): BatchNorm2d(512, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" )\n",
" )\n",
" (1): Bottleneck(\n",
" (conv1): Conv2d(512, 128, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(128, 128, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(128, 512, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(512, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" )\n",
" (2): Bottleneck(\n",
" (conv1): Conv2d(512, 128, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(128, 128, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(128, 512, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(512, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" )\n",
" (3): Bottleneck(\n",
" (conv1): Conv2d(512, 128, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(128, 128, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(128, 512, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(512, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" )\n",
" )\n",
" (0): Bottleneck(\n",
" (conv1): Conv2d(512, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(256, 256, kernel_size=(3, 3), stride=(2, 2), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(256, 1024, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(1024, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" (downsample): Sequential(\n",
" (0): Conv2d(512, 1024, kernel_size=(1, 1), stride=(2, 2), bias=False)\n",
" (1): BatchNorm2d(1024, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" )\n",
" )\n",
" )\n",
" (OutBatchNorm): BatchNorm2d(1024, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (OutNonlin): ReLU(inplace=True)\n",
" )\n",
" ) [TaskDrivenCore3 regularizers: ]\n",
" \n",
" (readout): MultipleFullGaussian2d(\n",
" (all_sessions): isotropic FullGaussian2d (1024 x 7 x 7 -> 1244) with bias\n",
" )\n",
"), EncoderShifter(\n",
" (core): TaskDrivenCore3(\n",
" (features): Sequential(\n",
" (TaskDriven): Sequential(\n",
" (conv1): Conv2d(3, 64, kernel_size=(7, 7), stride=(2, 2), padding=(3, 3), bias=False)\n",
" (bn1): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" (maxpool): MaxPool2d(kernel_size=3, stride=2, padding=1, dilation=1, ceil_mode=False)\n",
" (layer1): Sequential(\n",
" (0): Bottleneck(\n",
" (conv1): Conv2d(64, 64, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(64, 64, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(64, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" (downsample): Sequential(\n",
" (0): Conv2d(64, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (1): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" )\n",
" )\n",
" (1): Bottleneck(\n",
" (conv1): Conv2d(256, 64, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(64, 64, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(64, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" )\n",
" (2): Bottleneck(\n",
" (conv1): Conv2d(256, 64, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(64, 64, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(64, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" )\n",
" )\n",
" (layer2): Sequential(\n",
" (0): Bottleneck(\n",
" (conv1): Conv2d(256, 128, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(128, 128, kernel_size=(3, 3), stride=(2, 2), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(128, 512, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(512, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" (downsample): Sequential(\n",
" (0): Conv2d(256, 512, kernel_size=(1, 1), stride=(2, 2), bias=False)\n",
" (1): BatchNorm2d(512, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" )\n",
" )\n",
" (1): Bottleneck(\n",
" (conv1): Conv2d(512, 128, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(128, 128, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(128, 512, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(512, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" )\n",
" (2): Bottleneck(\n",
" (conv1): Conv2d(512, 128, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(128, 128, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(128, 512, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(512, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" )\n",
" (3): Bottleneck(\n",
" (conv1): Conv2d(512, 128, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(128, 128, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(128, 512, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(512, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" )\n",
" )\n",
" (0): Bottleneck(\n",
" (conv1): Conv2d(512, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(256, 256, kernel_size=(3, 3), stride=(2, 2), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(256, 1024, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(1024, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" (downsample): Sequential(\n",
" (0): Conv2d(512, 1024, kernel_size=(1, 1), stride=(2, 2), bias=False)\n",
" (1): BatchNorm2d(1024, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" )\n",
" )\n",
" )\n",
" (OutBatchNorm): BatchNorm2d(1024, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (OutNonlin): ReLU(inplace=True)\n",
" )\n",
" ) [TaskDrivenCore3 regularizers: ]\n",
" \n",
" (readout): MultipleFullGaussian2d(\n",
" (all_sessions): isotropic FullGaussian2d (1024 x 7 x 7 -> 1244) with bias\n",
" )\n",
"), EncoderShifter(\n",
" (core): TaskDrivenCore3(\n",
" (features): Sequential(\n",
" (TaskDriven): Sequential(\n",
" (conv1): Conv2d(3, 64, kernel_size=(7, 7), stride=(2, 2), padding=(3, 3), bias=False)\n",
" (bn1): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" (maxpool): MaxPool2d(kernel_size=3, stride=2, padding=1, dilation=1, ceil_mode=False)\n",
" (layer1): Sequential(\n",
" (0): Bottleneck(\n",
" (conv1): Conv2d(64, 64, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(64, 64, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(64, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" (downsample): Sequential(\n",
" (0): Conv2d(64, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (1): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" )\n",
" )\n",
" (1): Bottleneck(\n",
" (conv1): Conv2d(256, 64, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(64, 64, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(64, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" )\n",
" (2): Bottleneck(\n",
" (conv1): Conv2d(256, 64, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(64, 64, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(64, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" )\n",
" )\n",
" (layer2): Sequential(\n",
" (0): Bottleneck(\n",
" (conv1): Conv2d(256, 128, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(128, 128, kernel_size=(3, 3), stride=(2, 2), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(128, 512, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(512, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" (downsample): Sequential(\n",
" (0): Conv2d(256, 512, kernel_size=(1, 1), stride=(2, 2), bias=False)\n",
" (1): BatchNorm2d(512, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" )\n",
" )\n",
" (1): Bottleneck(\n",
" (conv1): Conv2d(512, 128, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(128, 128, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(128, 512, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(512, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" )\n",
" (2): Bottleneck(\n",
" (conv1): Conv2d(512, 128, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(128, 128, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(128, 512, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(512, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" )\n",
" (3): Bottleneck(\n",
" (conv1): Conv2d(512, 128, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(128, 128, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(128, 512, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(512, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" )\n",
" )\n",
" (0): Bottleneck(\n",
" (conv1): Conv2d(512, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(256, 256, kernel_size=(3, 3), stride=(2, 2), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(256, 1024, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(1024, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" (downsample): Sequential(\n",
" (0): Conv2d(512, 1024, kernel_size=(1, 1), stride=(2, 2), bias=False)\n",
" (1): BatchNorm2d(1024, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" )\n",
" )\n",
" )\n",
" (OutBatchNorm): BatchNorm2d(1024, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (OutNonlin): ReLU(inplace=True)\n",
" )\n",
" ) [TaskDrivenCore3 regularizers: ]\n",
" \n",
" (readout): MultipleFullGaussian2d(\n",
" (all_sessions): isotropic FullGaussian2d (1024 x 7 x 7 -> 1244) with bias\n",
" )\n",
"), EncoderShifter(\n",
" (core): TaskDrivenCore3(\n",
" (features): Sequential(\n",
" (TaskDriven): Sequential(\n",
" (conv1): Conv2d(3, 64, kernel_size=(7, 7), stride=(2, 2), padding=(3, 3), bias=False)\n",
" (bn1): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" (maxpool): MaxPool2d(kernel_size=3, stride=2, padding=1, dilation=1, ceil_mode=False)\n",
" (layer1): Sequential(\n",
" (0): Bottleneck(\n",
" (conv1): Conv2d(64, 64, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(64, 64, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(64, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" (downsample): Sequential(\n",
" (0): Conv2d(64, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (1): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" )\n",
" )\n",
" (1): Bottleneck(\n",
" (conv1): Conv2d(256, 64, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(64, 64, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(64, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" )\n",
" (2): Bottleneck(\n",
" (conv1): Conv2d(256, 64, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(64, 64, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(64, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" )\n",
" )\n",
" (layer2): Sequential(\n",
" (0): Bottleneck(\n",
" (conv1): Conv2d(256, 128, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(128, 128, kernel_size=(3, 3), stride=(2, 2), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(128, 512, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(512, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" (downsample): Sequential(\n",
" (0): Conv2d(256, 512, kernel_size=(1, 1), stride=(2, 2), bias=False)\n",
" (1): BatchNorm2d(512, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" )\n",
" )\n",
" (1): Bottleneck(\n",
" (conv1): Conv2d(512, 128, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(128, 128, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(128, 512, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(512, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" )\n",
" (2): Bottleneck(\n",
" (conv1): Conv2d(512, 128, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(128, 128, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(128, 512, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(512, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" )\n",
" (3): Bottleneck(\n",
" (conv1): Conv2d(512, 128, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(128, 128, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(128, 512, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(512, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" )\n",
" )\n",
" (0): Bottleneck(\n",
" (conv1): Conv2d(512, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(256, 256, kernel_size=(3, 3), stride=(2, 2), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(256, 1024, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(1024, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" (downsample): Sequential(\n",
" (0): Conv2d(512, 1024, kernel_size=(1, 1), stride=(2, 2), bias=False)\n",
" (1): BatchNorm2d(1024, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" )\n",
" )\n",
" )\n",
" (OutBatchNorm): BatchNorm2d(1024, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (OutNonlin): ReLU(inplace=True)\n",
" )\n",
" ) [TaskDrivenCore3 regularizers: ]\n",
" \n",
" (readout): MultipleFullGaussian2d(\n",
" (all_sessions): isotropic FullGaussian2d (1024 x 7 x 7 -> 1244) with bias\n",
" )\n",
"), EncoderShifter(\n",
" (core): TaskDrivenCore3(\n",
" (features): Sequential(\n",
" (TaskDriven): Sequential(\n",
" (conv1): Conv2d(3, 64, kernel_size=(7, 7), stride=(2, 2), padding=(3, 3), bias=False)\n",
" (bn1): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" (maxpool): MaxPool2d(kernel_size=3, stride=2, padding=1, dilation=1, ceil_mode=False)\n",
" (layer1): Sequential(\n",
" (0): Bottleneck(\n",
" (conv1): Conv2d(64, 64, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(64, 64, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(64, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" (downsample): Sequential(\n",
" (0): Conv2d(64, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (1): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" )\n",
" )\n",
" (1): Bottleneck(\n",
" (conv1): Conv2d(256, 64, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(64, 64, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(64, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" )\n",
" (2): Bottleneck(\n",
" (conv1): Conv2d(256, 64, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(64, 64, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(64, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(64, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" )\n",
" )\n",
" (layer2): Sequential(\n",
" (0): Bottleneck(\n",
" (conv1): Conv2d(256, 128, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(128, 128, kernel_size=(3, 3), stride=(2, 2), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(128, 512, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(512, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" (downsample): Sequential(\n",
" (0): Conv2d(256, 512, kernel_size=(1, 1), stride=(2, 2), bias=False)\n",
" (1): BatchNorm2d(512, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" )\n",
" )\n",
" (1): Bottleneck(\n",
" (conv1): Conv2d(512, 128, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(128, 128, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(128, 512, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(512, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" )\n",
" (2): Bottleneck(\n",
" (conv1): Conv2d(512, 128, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(128, 128, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(128, 512, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(512, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" )\n",
" (3): Bottleneck(\n",
" (conv1): Conv2d(512, 128, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(128, 128, kernel_size=(3, 3), stride=(1, 1), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(128, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(128, 512, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(512, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" )\n",
" )\n",
" (0): Bottleneck(\n",
" (conv1): Conv2d(512, 256, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn1): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv2): Conv2d(256, 256, kernel_size=(3, 3), stride=(2, 2), padding=(1, 1), bias=False)\n",
" (bn2): BatchNorm2d(256, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (conv3): Conv2d(256, 1024, kernel_size=(1, 1), stride=(1, 1), bias=False)\n",
" (bn3): BatchNorm2d(1024, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (relu): ReLU(inplace=True)\n",
" (downsample): Sequential(\n",
" (0): Conv2d(512, 1024, kernel_size=(1, 1), stride=(2, 2), bias=False)\n",
" (1): BatchNorm2d(1024, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" )\n",
" )\n",
" )\n",
" (OutBatchNorm): BatchNorm2d(1024, eps=1e-05, momentum=0.1, affine=True, track_running_stats=True)\n",
" (OutNonlin): ReLU(inplace=True)\n",
" )\n",
" ) [TaskDrivenCore3 regularizers: ]\n",
" \n",
" (readout): MultipleFullGaussian2d(\n",
" (all_sessions): isotropic FullGaussian2d (1024 x 7 x 7 -> 1244) with bias\n",
" )\n",
"))\n"
]
}
],
"source": [
"model = load_v4_model_from_weights(weights_path)\n",
"print(model)"
]
}
],
"metadata": {
"kernelspec": {
"display_name": "neurometry",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.11.3"
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},
"nbformat": 4,
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}