polpo.preprocessing.mri

Classes

AshsPrincetonYoungAdult3TEncoding()	Encoding of hippocampus subfields.
BrainStructEncoding(midline_structs, ...)
FreeSurferStructEncoding()	https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/AnatomicalROI/FreeSurferColorLUT
FslFirstStructEncoding()	https://fsl.fmrib.ox.ac.uk/fsl/docs/#/structural/first?id=supported-structures
LocalToTemplateTransform([template_affine])	Get transform from local to template system.
MeshExtractorFromSegmentedImage([struct_id, ...])	Mesh extractor from images.
MriImageLoader([filename, as_nib, return_affine])	Load image from .nii/.mgz file.
PreprocessingStep()	Preprocessing step.
SkimageMarchingCubes([level, step_size, ...])	https://scikit-image.org/docs/stable/api/skimage.measure.html#skimage.measure.marching_cubes
StructEncoding(structs, ids, colors)