topobench.transforms package

This module contains the transforms for the topobench package.

Subpackages

• topobench.transforms.data_manipulations package
  • AddGPSEInformation
    • AddGPSEInformation.__init__()
    • AddGPSEInformation.aggregate_inter_nbhd()
    • AddGPSEInformation.forward()
    • AddGPSEInformation.forward_interank()
    • AddGPSEInformation.forward_intrarank()
    • AddGPSEInformation.get_nbhd_cache()
    • AddGPSEInformation.interrank_boundary_index()
    • AddGPSEInformation.interrank_expand()
    • AddGPSEInformation.intrarank_expand()
  • BarycentricSubdivisionTransform
    • BarycentricSubdivisionTransform.__init__()
    • BarycentricSubdivisionTransform.forward()
  • CalculateSimplicialCurvature
    • CalculateSimplicialCurvature.__init__()
    • CalculateSimplicialCurvature.forward()
    • CalculateSimplicialCurvature.one_cell_curvature()
    • CalculateSimplicialCurvature.two_cell_curvature()
    • CalculateSimplicialCurvature.zero_cell_curvature()
  • CombinedEncodings
    • CombinedEncodings.__init__()
    • CombinedEncodings.forward()
  • CombinedFEs
    • CombinedFEs.__init__()
    • CombinedFEs.forward()
  • CombinedPSEs
    • CombinedPSEs.__init__()
    • CombinedPSEs.forward()
  • DifferentGausFeatures
    • DifferentGausFeatures.__init__()
    • DifferentGausFeatures.forward()
  • DifferentGausFeaturesSANN
    • DifferentGausFeaturesSANN.__init__()
    • DifferentGausFeaturesSANN.forward()
  • DifferentZeroFeaturesSANN
    • DifferentZeroFeaturesSANN.__init__()
    • DifferentZeroFeaturesSANN.forward()
  • ElectrostaticPE
    • ElectrostaticPE.__init__()
    • ElectrostaticPE.forward()
  • EqualGausFeatures
    • EqualGausFeatures.__init__()
    • EqualGausFeatures.forward()
  • GroupCombinatorialHomophily
    • GroupCombinatorialHomophily.__init__()
    • GroupCombinatorialHomophily.calculate_D_matrix()
    • GroupCombinatorialHomophily.calculate_affinity_score()
    • GroupCombinatorialHomophily.calculate_baseline_matrix()
    • GroupCombinatorialHomophily.forward()
  • HKFE
    • HKFE.__init__()
    • HKFE.forward()
  • HKdiagSE
    • HKdiagSE.__init__()
    • HKdiagSE.forward()
  • HOPSE_PE_Information
    • HOPSE_PE_Information.__init__()
    • HOPSE_PE_Information.aggregate_inter_nbhd()
    • HOPSE_PE_Information.forward()
    • HOPSE_PE_Information.forward_interank()
    • HOPSE_PE_Information.forward_intrarank()
    • HOPSE_PE_Information.get_nbhd_cache()
    • HOPSE_PE_Information.interrank_boundary_index()
    • HOPSE_PE_Information.interrank_expand()
    • HOPSE_PE_Information.intrarank_expand()
  • IdentityTransform
    • IdentityTransform.__init__()
    • IdentityTransform.forward()
  • InfereKNNConnectivity
    • InfereKNNConnectivity.__init__()
    • InfereKNNConnectivity.forward()
  • InfereRadiusConnectivity
    • InfereRadiusConnectivity.__init__()
    • InfereRadiusConnectivity.forward()
  • KHopFE
    • KHopFE.__init__()
    • KHopFE.forward()
  • KeepOnlyConnectedComponent
    • KeepOnlyConnectedComponent.__init__()
    • KeepOnlyConnectedComponent.forward()
  • KeepSelectedDataFields
    • KeepSelectedDataFields.__init__()
    • KeepSelectedDataFields.forward()
  • KeepSelectedTargetIndices
    • KeepSelectedTargetIndices.__init__()
    • KeepSelectedTargetIndices.forward()
  • LapPE
    • LapPE.__init__()
    • LapPE.forward()
  • MessagePassingHomophily
    • MessagePassingHomophily.__init__()
    • MessagePassingHomophily.forward()
  • NodeDegrees
    • NodeDegrees.__init__()
    • NodeDegrees.calculate_node_degrees()
    • NodeDegrees.forward()
  • NodeFeaturesToFloat
    • NodeFeaturesToFloat.__init__()
    • NodeFeaturesToFloat.forward()
  • OneHotDegreeFeatures
    • OneHotDegreeFeatures.__init__()
    • OneHotDegreeFeatures.forward()
  • PPRFE
    • PPRFE.__init__()
    • PPRFE.forward()
  • PrecomputeKHopFeatures
    • PrecomputeKHopFeatures.__init__()
    • PrecomputeKHopFeatures.forward()
  • RWSE
    • RWSE.__init__()
    • RWSE.forward()
  • RenameFields
    • RenameFields.__init__()
    • RenameFields.forward()
  • SelectDestinationEncodings
    • SelectDestinationEncodings.__init__()
    • SelectDestinationEncodings.forward()
  • SelectDestinationFEs
    • SelectDestinationFEs.__init__()
    • SelectDestinationFEs.forward()
  • SheafConnLapPE
    • SheafConnLapPE.__init__()
    • SheafConnLapPE.forward()
  • dotdict
  • Submodules
    • topobench.transforms.data_manipulations.add_gpse_information module
      • AddGPSEInformation
      • Data
      • GPSE
      • get_routes_from_neighborhoods()
      • interrank_boundary_index()
    • topobench.transforms.data_manipulations.all_encodings module
      • BaseTransform
      • CombinedEncodings
      • Data
      • SelectDestinationEncodings
    • topobench.transforms.data_manipulations.barycentric_subdivision module
      • BarycentricSubdivisionTransform
      • SimplicialComplex
      • data2simplicial()
      • from_sparse()
      • get_complex_connectivity()
    • topobench.transforms.data_manipulations.calculate_simplicial_curvature module
      • CalculateSimplicialCurvature
    • topobench.transforms.data_manipulations.combined_feature_encodings module
      • BaseTransform
      • CombinedFEs
      • Data
      • SelectDestinationFEs
    • topobench.transforms.data_manipulations.combined_positional_and_structural_encodings module
      • BaseTransform
      • CombinedPSEs
      • Data
    • topobench.transforms.data_manipulations.different_gaus_features module
      • DifferentGausFeatures
    • topobench.transforms.data_manipulations.different_gaus_features_sann module
      • DifferentGausFeaturesSANN
    • topobench.transforms.data_manipulations.different_zero_features_sann module
      • DifferentZeroFeaturesSANN
    • topobench.transforms.data_manipulations.electrostatic_encodings module
      • BaseTransform
      • Data
      • ElectrostaticPE
      • get_laplacian()
      • remove_self_loops()
    • topobench.transforms.data_manipulations.equal_gaus_features module
      • EqualGausFeatures
    • topobench.transforms.data_manipulations.group_homophily module
      • GroupCombinatorialHomophily
      • comb()
    • topobench.transforms.data_manipulations.hk_feature_encodings module
      • BaseTransform
      • Data
      • HKFE
      • expm_multiply()
      • get_laplacian()
      • to_scipy_sparse_matrix()
    • topobench.transforms.data_manipulations.hkdiag_encodings module
      • BaseTransform
      • Data
      • HKdiagSE
      • get_laplacian()
      • remove_self_loops()
    • topobench.transforms.data_manipulations.hopse_ps_information module
      • CombinedEncodings
      • Data
      • HOPSE_PE_Information
      • SelectDestinationEncodings
      • dotdict
      • get_routes_from_neighborhoods()
      • interrank_boundary_index()
    • topobench.transforms.data_manipulations.identity_transform module
      • IdentityTransform
    • topobench.transforms.data_manipulations.infere_knn_connectivity module
      • InfereKNNConnectivity
      • knn_graph()
    • topobench.transforms.data_manipulations.infere_radius_connectivity module
      • InfereRadiusConnectivity
      • radius_graph()
    • topobench.transforms.data_manipulations.keep_only_connected_component module
      • KeepOnlyConnectedComponent
      • LargestConnectedComponents
    • topobench.transforms.data_manipulations.keep_selected_data_fields module
      • KeepSelectedDataFields
    • topobench.transforms.data_manipulations.keep_selected_target_indices module
      • KeepSelectedTargetIndices
    • topobench.transforms.data_manipulations.khop_feature_encodings module
      • BaseTransform
      • Data
      • KHopFE
      • degree()
      • to_dense_adj()
    • topobench.transforms.data_manipulations.laplacian_encodings module
      • BaseTransform
      • Data
      • LapPE
      • degree()
      • eigsh()
      • get_laplacian()
      • to_scipy_sparse_matrix()
    • topobench.transforms.data_manipulations.mp_homophily module
      • MessagePassingHomophily
    • topobench.transforms.data_manipulations.node_degrees module
      • NodeDegrees
    • topobench.transforms.data_manipulations.node_features_to_float module
      • NodeFeaturesToFloat
    • topobench.transforms.data_manipulations.one_hot_degree_features module
      • OneHotDegreeFeatures
      • one_hot()
    • topobench.transforms.data_manipulations.ppr_feature_encodings module
      • BaseTransform
      • Data
      • PPRFE
      • add_self_loops()
      • degree()
      • inv()
      • to_dense_adj()
    • topobench.transforms.data_manipulations.precompute_khop_features module
      • PrecomputeKHopFeatures
    • topobench.transforms.data_manipulations.random_walk_encodings module
      • BaseTransform
      • Data
      • RWSE
      • degree()
    • topobench.transforms.data_manipulations.rename_fields module
      • RenameFields
    • topobench.transforms.data_manipulations.sheaf_connlap_encodings module
      • BaseTransform
      • Data
      • SheafConnLapPE
      • coo_matrix
      • degree()
      • remove_self_loops()
      • sp_diags()
      • svd()
      • to_undirected()
• topobench.transforms.feature_liftings package
  • Concatenation
    • Concatenation.__init__()
    • Concatenation.forward()
    • Concatenation.lift_features()
  • Duplicate
    • Duplicate.__init__()
    • Duplicate.forward()
    • Duplicate.lift_features()
  • Identity
    • Identity.__init__()
    • Identity.forward()
  • ProjectionSum
    • ProjectionSum.__init__()
    • ProjectionSum.forward()
    • ProjectionSum.lift_features()
  • Set
    • Set.__init__()
    • Set.forward()
    • Set.lift_features()
  • Submodules
    • topobench.transforms.feature_liftings.concatenation module
      • Concatenation
    • topobench.transforms.feature_liftings.duplicate module
      • Duplicate
    • topobench.transforms.feature_liftings.identity module
      • Identity
    • topobench.transforms.feature_liftings.projection_sum module
      • ProjectionSum
    • topobench.transforms.feature_liftings.set module
      • Set
• topobench.transforms.liftings package
  • AbstractLifting
    • AbstractLifting.__init__()
    • AbstractLifting.forward()
    • AbstractLifting.lift_topology()
  • CellComplexLifting
    • CellComplexLifting.__init__()
  • CombinatorialLifting
    • CombinatorialLifting.__init__()
  • GraphLifting
    • GraphLifting.__init__()
  • HypergraphLifting
    • HypergraphLifting.__init__()
  • PointCloudLifting
    • PointCloudLifting.__init__()
  • SimplicialLifting
    • SimplicialLifting.__init__()
  • Subpackages
    • topobench.transforms.liftings.graph2cell package
      • CellCycleLifting
      • DiscreteConfigurationComplexLifting
      • Graph2CellLifting
      • Submodules
    • topobench.transforms.liftings.graph2combinatorial package
      • Graph2CombinatorialLifting
      • GraphTriangleInducedCC
      • Submodules
    • topobench.transforms.liftings.graph2hypergraph package
      • ExpanderGraphLifting
      • Graph2HypergraphLifting
      • HypergraphFormanRicciCurvatureLifting
      • HypergraphKHopLifting
      • HypergraphKNNLifting
      • HypergraphKernelLifting
      • MapperLifting
      • ModularityMaximizationLifting
      • Submodules
    • topobench.transforms.liftings.graph2simplicial package
      • Graph2SimplicialLifting
      • LatentCliqueLifting
      • NeighborhoodComplexLifting
      • SimplicialCliqueLifting
      • SimplicialDnDLifting
      • SimplicialEccentricityLifting
      • SimplicialGraphInducedLifting
      • SimplicialKHopLifting
      • SimplicialLineLifting
      • SimplicialVietorisRipsLifting
      • Submodules
    • topobench.transforms.liftings.hypergraph2combinatorial package
      • Hypergraph2CombinatorialLifting
      • UniversalStrictLifting
      • Submodules
    • topobench.transforms.liftings.pointcloud2hypergraph package
      • MoGMSTLifting
      • PointCloud2HypergraphLifting
      • PointNetLifting
      • VoronoiLifting
      • Submodules
    • topobench.transforms.liftings.pointcloud2simplicial package
      • AlphaComplexLifting
      • PointCloud2SimplicialLifting
      • RandomFlagComplexLifting
      • Submodules
    • topobench.transforms.liftings.simplicial2combinatorial package
      • CofaceCCLifting
      • Simplicial2CombinatorialLifting
      • Submodules
  • Submodules
    • topobench.transforms.liftings.base module
      • AbstractLifting
      • abstractmethod()
    • topobench.transforms.liftings.liftings module
      • AbstractLifting
      • CellComplexLifting
      • CombinatorialLifting
      • GraphLifting
      • HypergraphLifting
      • PointCloudLifting
      • SimplicialLifting
      • is_undirected()
      • to_undirected()

Submodules

• topobench.transforms.data_transform module
  • DataTransform
    • DataTransform.__init__()
    • DataTransform.forward()