topobench.transforms package

Subpackages

• topobench.transforms.data_manipulations package
  • Submodules
  • topobench.transforms.data_manipulations.calculate_simplicial_curvature module
    • CalculateSimplicialCurvature
      • CalculateSimplicialCurvature.forward()
      • CalculateSimplicialCurvature.one_cell_curvature()
      • CalculateSimplicialCurvature.two_cell_curvature()
      • CalculateSimplicialCurvature.zero_cell_curvature()
  • topobench.transforms.data_manipulations.equal_gaus_features module
    • EqualGausFeatures
      • EqualGausFeatures.forward()
  • topobench.transforms.data_manipulations.group_homophily module
    • GroupCombinatorialHomophily
      • GroupCombinatorialHomophily.calculate_D_matrix()
      • GroupCombinatorialHomophily.calculate_affinity_score()
      • GroupCombinatorialHomophily.calculate_baseline_matrix()
      • GroupCombinatorialHomophily.forward()
  • topobench.transforms.data_manipulations.identity_transform module
    • IdentityTransform
      • IdentityTransform.forward()
  • topobench.transforms.data_manipulations.infere_knn_connectivity module
    • InfereKNNConnectivity
      • InfereKNNConnectivity.forward()
  • topobench.transforms.data_manipulations.infere_radius_connectivity module
    • InfereRadiusConnectivity
      • InfereRadiusConnectivity.forward()
  • topobench.transforms.data_manipulations.keep_only_connected_component module
    • KeepOnlyConnectedComponent
      • KeepOnlyConnectedComponent.forward()
  • topobench.transforms.data_manipulations.keep_selected_data_fields module
    • KeepSelectedDataFields
      • KeepSelectedDataFields.forward()
  • topobench.transforms.data_manipulations.mp_homophily module
    • MessagePassingHomophily
      • MessagePassingHomophily.forward()
  • topobench.transforms.data_manipulations.node_degrees module
    • NodeDegrees
      • NodeDegrees.calculate_node_degrees()
      • NodeDegrees.forward()
  • topobench.transforms.data_manipulations.node_features_to_float module
    • NodeFeaturesToFloat
      • NodeFeaturesToFloat.forward()
  • topobench.transforms.data_manipulations.one_hot_degree_features module
    • OneHotDegreeFeatures
      • OneHotDegreeFeatures.forward()
  • topobench.transforms.data_manipulations.redefine_simplicial_neighbourhoods module
    • RedefineSimplicialNeighbourhoods
      • RedefineSimplicialNeighbourhoods.forward()
  • Module contents
    • CalculateSimplicialCurvature
      • CalculateSimplicialCurvature.forward()
      • CalculateSimplicialCurvature.one_cell_curvature()
      • CalculateSimplicialCurvature.two_cell_curvature()
      • CalculateSimplicialCurvature.zero_cell_curvature()
    • EqualGausFeatures
      • EqualGausFeatures.forward()
    • GroupCombinatorialHomophily
      • GroupCombinatorialHomophily.calculate_D_matrix()
      • GroupCombinatorialHomophily.calculate_affinity_score()
      • GroupCombinatorialHomophily.calculate_baseline_matrix()
      • GroupCombinatorialHomophily.forward()
    • IdentityTransform
      • IdentityTransform.forward()
    • InfereKNNConnectivity
      • InfereKNNConnectivity.forward()
    • InfereRadiusConnectivity
      • InfereRadiusConnectivity.forward()
    • KeepOnlyConnectedComponent
      • KeepOnlyConnectedComponent.forward()
    • KeepSelectedDataFields
      • KeepSelectedDataFields.forward()
    • MessagePassingHomophily
      • MessagePassingHomophily.forward()
    • NodeDegrees
      • NodeDegrees.calculate_node_degrees()
      • NodeDegrees.forward()
    • NodeFeaturesToFloat
      • NodeFeaturesToFloat.forward()
    • OneHotDegreeFeatures
      • OneHotDegreeFeatures.forward()
    • RedefineSimplicialNeighbourhoods
      • RedefineSimplicialNeighbourhoods.forward()
• topobench.transforms.feature_liftings package
  • Submodules
  • topobench.transforms.feature_liftings.concatenation module
    • Concatenation
      • Concatenation.forward()
      • Concatenation.lift_features()
  • topobench.transforms.feature_liftings.identity module
    • Identity
      • Identity.forward()
  • topobench.transforms.feature_liftings.projection_sum module
    • ProjectionSum
      • ProjectionSum.forward()
      • ProjectionSum.lift_features()
  • topobench.transforms.feature_liftings.set module
    • Set
      • Set.forward()
      • Set.lift_features()
  • Module contents
    • Concatenation
      • Concatenation.forward()
      • Concatenation.lift_features()
    • Identity
      • Identity.forward()
    • ProjectionSum
      • ProjectionSum.forward()
      • ProjectionSum.lift_features()
    • Set
      • Set.forward()
      • Set.lift_features()
• topobench.transforms.liftings package
  • Subpackages
    • topobench.transforms.liftings.graph2cell package
      • Submodules
      • topobench.transforms.liftings.graph2cell.base module
      • topobench.transforms.liftings.graph2cell.cycle_lifting module
      • topobench.transforms.liftings.graph2cell.discrete_configuration_complex_lifting module
      • Module contents
    • topobench.transforms.liftings.graph2combinatorial package
      • Submodules
      • topobench.transforms.liftings.graph2combinatorial.base module
      • topobench.transforms.liftings.graph2combinatorial.graph_induced_cc module
      • Module contents
    • topobench.transforms.liftings.graph2hypergraph package
      • Submodules
      • topobench.transforms.liftings.graph2hypergraph.base module
      • topobench.transforms.liftings.graph2hypergraph.expander_graph_lifting module
      • topobench.transforms.liftings.graph2hypergraph.forman_ricci_curvature_lifting module
      • topobench.transforms.liftings.graph2hypergraph.kernel_lifting module
      • topobench.transforms.liftings.graph2hypergraph.khop_lifting module
      • topobench.transforms.liftings.graph2hypergraph.knn_lifting module
      • topobench.transforms.liftings.graph2hypergraph.mapper_lifting module
      • topobench.transforms.liftings.graph2hypergraph.modularity_maximization_lifting module
      • Module contents
    • topobench.transforms.liftings.graph2simplicial package
      • Submodules
      • topobench.transforms.liftings.graph2simplicial.base module
      • topobench.transforms.liftings.graph2simplicial.clique_lifting module
      • topobench.transforms.liftings.graph2simplicial.dnd_lifting module
      • topobench.transforms.liftings.graph2simplicial.eccentricity_lifting module
      • topobench.transforms.liftings.graph2simplicial.graph_induced_lifting module
      • topobench.transforms.liftings.graph2simplicial.khop_lifting module
      • topobench.transforms.liftings.graph2simplicial.latentclique_lifting module
      • topobench.transforms.liftings.graph2simplicial.line_lifting module
      • topobench.transforms.liftings.graph2simplicial.neighborhood_complex_lifting module
      • topobench.transforms.liftings.graph2simplicial.vietoris_rips_lifting module
      • Module contents
    • topobench.transforms.liftings.hypergraph2combinatorial package
      • Submodules
      • topobench.transforms.liftings.hypergraph2combinatorial.base module
      • topobench.transforms.liftings.hypergraph2combinatorial.universal_strict_lifting module
      • Module contents
    • topobench.transforms.liftings.pointcloud2hypergraph package
      • Submodules
      • topobench.transforms.liftings.pointcloud2hypergraph.base module
      • topobench.transforms.liftings.pointcloud2hypergraph.mogmst_lifting module
      • topobench.transforms.liftings.pointcloud2hypergraph.pointnet_lifting module
      • topobench.transforms.liftings.pointcloud2hypergraph.voronoi_lifting module
      • Module contents
    • topobench.transforms.liftings.pointcloud2simplicial package
      • Submodules
      • topobench.transforms.liftings.pointcloud2simplicial.alpha_complex_lifting module
      • topobench.transforms.liftings.pointcloud2simplicial.base module
      • topobench.transforms.liftings.pointcloud2simplicial.random_flag_complex module
      • Module contents
    • topobench.transforms.liftings.simplicial2combinatorial package
      • Submodules
      • topobench.transforms.liftings.simplicial2combinatorial.base module
      • topobench.transforms.liftings.simplicial2combinatorial.coface_cc_lifting module
      • Module contents
  • Submodules
  • topobench.transforms.liftings.base module
    • AbstractLifting
      • AbstractLifting.forward()
      • AbstractLifting.lift_topology()
  • topobench.transforms.liftings.liftings module
    • CellComplexLifting
    • CombinatorialLifting
    • GraphLifting
    • HypergraphLifting
    • PointCloudLifting
    • SimplicialLifting
  • Module contents
    • AbstractLifting
      • AbstractLifting.forward()
      • AbstractLifting.lift_topology()
    • CellComplexLifting
    • CombinatorialLifting
    • GraphLifting
    • HypergraphLifting
    • PointCloudLifting
    • SimplicialLifting

Submodules

topobench.transforms.data_transform module

DataTransform class.

class topobench.transforms.data_transform.DataTransform(transform_name, **kwargs)

Bases: BaseTransform

Abstract class to define a custom data lifting.

Parameters:

transform_namestr

The name of the transform to be used.

**kwargsdict

Additional arguments for the class. Should contain “transform_name”.

forward(data: Data) → Data

Forward pass of the lifting.

Parameters:

datatorch_geometric.data.Data

The input data to be lifted.

Returns:

torch_geometric.data.Data

The lifted data.

Module contents

This module contains the transforms for the topobench package.