Index

A

AbstractEvaluator (class in topobench.evaluator) (class in topobench.evaluator.base) AbstractFeatureEncoder (class in topobench.nn.encoders.base) AbstractLifting (class in topobench.transforms.liftings) (class in topobench.transforms.liftings.base) AbstractLoader (class in topobench.data.loaders) (class in topobench.data.loaders.base) AbstractLoss (class in topobench.loss.base) AbstractOptimizer (class in topobench.optimizer.base) AbstractWrapper (class in topobench.nn.wrappers) (class in topobench.nn.wrappers.base) AbstractZeroCellReadOut (class in topobench.nn.readouts) (class in topobench.nn.readouts.base) aggr_norm_func() (topobench.nn.backbones.SCCNNLayer method) (topobench.nn.backbones.simplicial.sccnn.SCCNNLayer method) (topobench.nn.backbones.simplicial.SCCNNLayer method)

aggregate_inter_nbhd() (topobench.nn.backbones.combinatorial.gccn.TopoTune method) (topobench.nn.backbones.combinatorial.gccn_onehasse.TopoTune_OneHasse method) (topobench.nn.backbones.combinatorial.TopoTune method) (topobench.nn.backbones.combinatorial.TopoTune_OneHasse method) (topobench.nn.backbones.TopoTune method) (topobench.nn.backbones.TopoTune_OneHasse method) all_nbhds_expand() (topobench.nn.backbones.combinatorial.gccn_onehasse.TopoTune_OneHasse method) (topobench.nn.backbones.combinatorial.TopoTune_OneHasse method) (topobench.nn.backbones.TopoTune_OneHasse method) all_nbhds_gnn_forward() (topobench.nn.backbones.combinatorial.gccn_onehasse.TopoTune_OneHasse method) (topobench.nn.backbones.combinatorial.TopoTune_OneHasse method) (topobench.nn.backbones.TopoTune_OneHasse method) AllCellFeatureEncoder (class in topobench.nn.encoders) (class in topobench.nn.encoders.all_cell_encoder) AlphaComplexLifting (class in topobench.transforms.liftings.pointcloud2simplicial) (class in topobench.transforms.liftings.pointcloud2simplicial.alpha_complex_lifting) assign_train_val_test_mask_to_graphs() (in module topobench.data.utils.split_utils)

B

BaseEncoder (class in topobench.nn.encoders.all_cell_encoder)

build_paths() (in module topobench.transforms.liftings.graph2combinatorial.graph_induced_cc)

C

calculate_affinity_score() (topobench.transforms.data_manipulations.group_homophily.GroupCombinatorialHomophily method) (topobench.transforms.data_manipulations.GroupCombinatorialHomophily method) calculate_baseline_matrix() (topobench.transforms.data_manipulations.group_homophily.GroupCombinatorialHomophily method) (topobench.transforms.data_manipulations.GroupCombinatorialHomophily method) calculate_D_matrix() (topobench.transforms.data_manipulations.group_homophily.GroupCombinatorialHomophily method) (topobench.transforms.data_manipulations.GroupCombinatorialHomophily method) calculate_node_degrees() (topobench.transforms.data_manipulations.node_degrees.NodeDegrees method) (topobench.transforms.data_manipulations.NodeDegrees method) CalculateSimplicialCurvature (class in topobench.transforms.data_manipulations) (class in topobench.transforms.data_manipulations.calculate_simplicial_curvature) CANWrapper (class in topobench.nn.wrappers) (class in topobench.nn.wrappers.cell) (class in topobench.nn.wrappers.cell.can_wrapper) CCCN (class in topobench.nn.backbones) (class in topobench.nn.backbones.cell) (class in topobench.nn.backbones.cell.cccn) CCCNWrapper (class in topobench.nn.wrappers) (class in topobench.nn.wrappers.cell) (class in topobench.nn.wrappers.cell.cccn_wrapper) CCXNWrapper (class in topobench.nn.wrappers) (class in topobench.nn.wrappers.cell) (class in topobench.nn.wrappers.cell.ccxn_wrapper) CellComplexLifting (class in topobench.transforms.liftings) (class in topobench.transforms.liftings.liftings) CellCycleLifting (class in topobench.transforms.liftings.graph2cell) (class in topobench.transforms.liftings.graph2cell.cycle_lifting) chebyshev_conv() (topobench.nn.backbones.SCCNNLayer method) (topobench.nn.backbones.simplicial.sccnn.SCCNNLayer method) (topobench.nn.backbones.simplicial.SCCNNLayer method) CitationHypergraphDataset (class in topobench.data.datasets) (class in topobench.data.datasets.citation_hypergaph_dataset)

CitationHypergraphDatasetLoader (class in topobench.data.loaders) (class in topobench.data.loaders.hypergraph) (class in topobench.data.loaders.hypergraph.citation_hypergraph_dataset_loader) CofaceCCLifting (class in topobench.transforms.liftings.simplicial2combinatorial) (class in topobench.transforms.liftings.simplicial2combinatorial.coface_cc_lifting) collate_fn() (in module topobench.dataloader.utils) CombinatorialLifting (class in topobench.transforms.liftings) (class in topobench.transforms.liftings.liftings) compute() (topobench.evaluator.AbstractEvaluator method) (topobench.evaluator.base.AbstractEvaluator method) (topobench.evaluator.evaluator.TBEvaluator method) (topobench.evaluator.metrics.example.ExampleRegressionMetric method) (topobench.evaluator.metrics.ExampleRegressionMetric method) (topobench.evaluator.TBEvaluator method) compute_logits() (topobench.nn.readouts.AbstractZeroCellReadOut method) (topobench.nn.readouts.base.AbstractZeroCellReadOut method) Concatenation (class in topobench.transforms.feature_liftings) (class in topobench.transforms.feature_liftings.concatenation) configure_optimizer() (topobench.optimizer.base.AbstractOptimizer method) (topobench.optimizer.optimizer.TBOptimizer method) (topobench.optimizer.TBOptimizer method) configure_optimizers() (topobench.model.model.TBModel method) (topobench.model.TBModel method) count_number_of_parameters() (in module topobench.run) CW (class in topobench.nn.backbones) (class in topobench.nn.backbones.cell) (class in topobench.nn.backbones.cell.cccn) CWNWrapper (class in topobench.nn.wrappers) (class in topobench.nn.wrappers.cell) (class in topobench.nn.wrappers.cell.cwn_wrapper)

D

data2simplicial() (in module topobench.data.utils) (in module topobench.data.utils.utils) DataloadDataset (class in topobench.dataloader) (class in topobench.dataloader.dataload_dataset) DatasetLoss (class in topobench.loss.dataset.DatasetLoss) DataTransform (class in topobench.transforms.data_transform) detect_communities() (topobench.transforms.liftings.graph2hypergraph.modularity_maximization_lifting.ModularityMaximizationLifting method) (topobench.transforms.liftings.graph2hypergraph.ModularityMaximizationLifting method) DGM_d (class in topobench.nn.encoders.kdgm) DGMLoss (class in topobench.loss.model.DGMLoss) DGMStructureFeatureEncoder (class in topobench.nn.encoders) (class in topobench.nn.encoders.dgm_encoder)

DiscreteConfigurationComplexLifting (class in topobench.transforms.liftings.graph2cell) (class in topobench.transforms.liftings.graph2cell.discrete_configuration_complex_lifting) DomainData (class in topobench.dataloader.utils) download() (topobench.data.datasets.citation_hypergaph_dataset.CitationHypergraphDataset method) (topobench.data.datasets.CitationHypergraphDataset method) (topobench.data.datasets.mantra_dataset.MantraDataset method) (topobench.data.datasets.MantraDataset method) (topobench.data.datasets.us_county_demos_dataset.USCountyDemosDataset method) (topobench.data.datasets.USCountyDemosDataset method) download_file_from_drive() (in module topobench.data.utils) (in module topobench.data.utils.io_utils) download_file_from_link() (in module topobench.data.utils.io_utils)

E

edge_cycle_to_vertex_cycle() (in module topobench.transforms.liftings.graph2cell.discrete_configuration_complex_lifting) EDGNN (class in topobench.nn.backbones) (class in topobench.nn.backbones.hypergraph) (class in topobench.nn.backbones.hypergraph.edgnn) enforce_tags() (in module topobench.utils) (in module topobench.utils.rich_utils) ensure_serializable() (in module topobench.data.utils) (in module topobench.data.utils.utils) EqualGausFeatures (class in topobench.transforms.data_manipulations) (class in topobench.transforms.data_manipulations.equal_gaus_features)

EquivSetConv (class in topobench.nn.backbones) (class in topobench.nn.backbones.hypergraph) (class in topobench.nn.backbones.hypergraph.edgnn) ExampleRegressionMetric (class in topobench.evaluator.metrics) (class in topobench.evaluator.metrics.example) ExpanderGraphLifting (class in topobench.transforms.liftings.graph2hypergraph) (class in topobench.transforms.liftings.graph2hypergraph.expander_graph_lifting) extras() (in module topobench.utils) (in module topobench.utils.utils)

F

FILE_FORMAT (topobench.data.datasets.citation_hypergaph_dataset.CitationHypergraphDataset attribute) (topobench.data.datasets.CitationHypergraphDataset attribute) (topobench.data.datasets.mantra_dataset.MantraDataset attribute) (topobench.data.datasets.MantraDataset attribute) (topobench.data.datasets.us_county_demos_dataset.USCountyDemosDataset attribute) (topobench.data.datasets.USCountyDemosDataset attribute) find_mog() (topobench.transforms.liftings.pointcloud2hypergraph.mogmst_lifting.MoGMSTLifting method) (topobench.transforms.liftings.pointcloud2hypergraph.MoGMSTLifting method) find_overlapping_paths() (in module topobench.transforms.liftings.graph2combinatorial.graph_induced_cc) find_tetrahedrons() (in module topobench.data.utils.utils) find_triangles() (in module topobench.data.utils.utils) fit_transform() (topobench.transforms.liftings.graph2hypergraph.mapper_lifting.MapperCover method) flops() (topobench.nn.backbones.hypergraph.edgnn.MLP method) (topobench.nn.backbones.hypergraph.MLP method) (topobench.nn.backbones.MLP method) forward() (topobench.loss.base.AbstractLoss method) (topobench.loss.dataset.DatasetLoss.DatasetLoss method) (topobench.loss.loss.TBLoss method) (topobench.loss.model.DGMLoss.DGMLoss method) (topobench.loss.model.GraphMLPLoss.GraphMLPLoss method) (topobench.loss.TBLoss method) (topobench.model.model.TBModel method) (topobench.model.TBModel method) (topobench.nn.backbones.CCCN method) (topobench.nn.backbones.cell.CCCN method) (topobench.nn.backbones.cell.cccn.CCCN method) (topobench.nn.backbones.cell.cccn.CW method) (topobench.nn.backbones.cell.CW method) (topobench.nn.backbones.combinatorial.gccn.TopoTune method) (topobench.nn.backbones.combinatorial.gccn_onehasse.TopoTune_OneHasse method) (topobench.nn.backbones.combinatorial.TopoTune method) (topobench.nn.backbones.combinatorial.TopoTune_OneHasse method) (topobench.nn.backbones.CW method) (topobench.nn.backbones.EDGNN method) (topobench.nn.backbones.EquivSetConv method) (topobench.nn.backbones.graph.graph_mlp.GraphMLP method) (topobench.nn.backbones.graph.graph_mlp.Mlp method) (topobench.nn.backbones.graph.GraphMLP method) (topobench.nn.backbones.graph.identity_gnn.IdentityGAT method) (topobench.nn.backbones.graph.identity_gnn.IdentityGCN method) (topobench.nn.backbones.graph.identity_gnn.IdentityGIN method) (topobench.nn.backbones.graph.identity_gnn.IdentitySAGE method) (topobench.nn.backbones.graph.IdentityGAT method) (topobench.nn.backbones.graph.IdentityGCN method) (topobench.nn.backbones.graph.IdentityGIN method) (topobench.nn.backbones.graph.IdentitySAGE method) (topobench.nn.backbones.graph.Mlp method) (topobench.nn.backbones.GraphMLP method) (topobench.nn.backbones.hypergraph.EDGNN method) (topobench.nn.backbones.hypergraph.edgnn.EDGNN method) (topobench.nn.backbones.hypergraph.edgnn.EquivSetConv method) (topobench.nn.backbones.hypergraph.edgnn.JumpLinkConv method) (topobench.nn.backbones.hypergraph.edgnn.MeanDegConv method) (topobench.nn.backbones.hypergraph.edgnn.MLP method) (topobench.nn.backbones.hypergraph.edgnn.PlainMLP method) (topobench.nn.backbones.hypergraph.EquivSetConv method) (topobench.nn.backbones.hypergraph.JumpLinkConv method) (topobench.nn.backbones.hypergraph.MeanDegConv method) (topobench.nn.backbones.hypergraph.MLP method) (topobench.nn.backbones.hypergraph.PlainMLP method) (topobench.nn.backbones.IdentityGAT method) (topobench.nn.backbones.IdentityGCN method) (topobench.nn.backbones.IdentityGIN method) (topobench.nn.backbones.IdentitySAGE method) (topobench.nn.backbones.JumpLinkConv method) (topobench.nn.backbones.MeanDegConv method) (topobench.nn.backbones.MLP method) (topobench.nn.backbones.Mlp method) (topobench.nn.backbones.PlainMLP method) (topobench.nn.backbones.SCCNNCustom method) (topobench.nn.backbones.SCCNNLayer method) (topobench.nn.backbones.simplicial.sccnn.SCCNNCustom method) (topobench.nn.backbones.simplicial.sccnn.SCCNNLayer method) (topobench.nn.backbones.simplicial.SCCNNCustom method) (topobench.nn.backbones.simplicial.SCCNNLayer method) (topobench.nn.backbones.TopoTune method) (topobench.nn.backbones.TopoTune_OneHasse method) (topobench.nn.encoders.all_cell_encoder.AllCellFeatureEncoder method) (topobench.nn.encoders.all_cell_encoder.BaseEncoder method) (topobench.nn.encoders.AllCellFeatureEncoder method) (topobench.nn.encoders.base.AbstractFeatureEncoder method) (topobench.nn.encoders.dgm_encoder.DGMStructureFeatureEncoder method) (topobench.nn.encoders.DGMStructureFeatureEncoder method) (topobench.nn.encoders.kdgm.DGM_d method) (topobench.nn.readouts.AbstractZeroCellReadOut method) (topobench.nn.readouts.base.AbstractZeroCellReadOut method) (topobench.nn.readouts.identical.NoReadOut method) (topobench.nn.readouts.NoReadOut method) (topobench.nn.readouts.propagate_signal_down.PropagateSignalDown method) (topobench.nn.readouts.PropagateSignalDown method) (topobench.nn.wrappers.AbstractWrapper method) (topobench.nn.wrappers.base.AbstractWrapper method) (topobench.nn.wrappers.CANWrapper method) (topobench.nn.wrappers.CCCNWrapper method) (topobench.nn.wrappers.CCXNWrapper method) (topobench.nn.wrappers.cell.can_wrapper.CANWrapper method) (topobench.nn.wrappers.cell.CANWrapper method) (topobench.nn.wrappers.cell.cccn_wrapper.CCCNWrapper method) (topobench.nn.wrappers.cell.CCCNWrapper method) (topobench.nn.wrappers.cell.ccxn_wrapper.CCXNWrapper method) (topobench.nn.wrappers.cell.CCXNWrapper method) (topobench.nn.wrappers.cell.cwn_wrapper.CWNWrapper method) (topobench.nn.wrappers.cell.CWNWrapper method) (topobench.nn.wrappers.combinatorial.tune_wrapper.TuneWrapper method) (topobench.nn.wrappers.combinatorial.TuneWrapper method) (topobench.nn.wrappers.CWNWrapper method) (topobench.nn.wrappers.GNNWrapper method) (topobench.nn.wrappers.graph.gnn_wrapper.GNNWrapper method) (topobench.nn.wrappers.graph.GNNWrapper method) (topobench.nn.wrappers.graph.graph_mlp_wrapper.GraphMLPWrapper method) (topobench.nn.wrappers.graph.GraphMLPWrapper method) (topobench.nn.wrappers.GraphMLPWrapper method) (topobench.nn.wrappers.hypergraph.hypergraph_wrapper.HypergraphWrapper method) (topobench.nn.wrappers.hypergraph.HypergraphWrapper method) (topobench.nn.wrappers.HypergraphWrapper method) (topobench.nn.wrappers.SANWrapper method) (topobench.nn.wrappers.SCCNNWrapper method) (topobench.nn.wrappers.SCCNWrapper method) (topobench.nn.wrappers.SCNWrapper method) (topobench.nn.wrappers.simplicial.san_wrapper.SANWrapper method) (topobench.nn.wrappers.simplicial.SANWrapper method) (topobench.nn.wrappers.simplicial.sccn_wrapper.SCCNWrapper method) (topobench.nn.wrappers.simplicial.sccnn_wrapper.SCCNNWrapper method) (topobench.nn.wrappers.simplicial.SCCNNWrapper method) (topobench.nn.wrappers.simplicial.SCCNWrapper method) (topobench.nn.wrappers.simplicial.scn_wrapper.SCNWrapper method) (topobench.nn.wrappers.simplicial.SCNWrapper method) (topobench.nn.wrappers.TuneWrapper method) (topobench.transforms.data_manipulations.calculate_simplicial_curvature.CalculateSimplicialCurvature method) (topobench.transforms.data_manipulations.CalculateSimplicialCurvature method) (topobench.transforms.data_manipulations.equal_gaus_features.EqualGausFeatures method) (topobench.transforms.data_manipulations.EqualGausFeatures method) (topobench.transforms.data_manipulations.group_homophily.GroupCombinatorialHomophily method) (topobench.transforms.data_manipulations.GroupCombinatorialHomophily method) (topobench.transforms.data_manipulations.identity_transform.IdentityTransform method) (topobench.transforms.data_manipulations.IdentityTransform method) (topobench.transforms.data_manipulations.infere_knn_connectivity.InfereKNNConnectivity method) (topobench.transforms.data_manipulations.infere_radius_connectivity.InfereRadiusConnectivity method) (topobench.transforms.data_manipulations.InfereKNNConnectivity method) (topobench.transforms.data_manipulations.InfereRadiusConnectivity method) (topobench.transforms.data_manipulations.keep_only_connected_component.KeepOnlyConnectedComponent method) (topobench.transforms.data_manipulations.keep_selected_data_fields.KeepSelectedDataFields method) (topobench.transforms.data_manipulations.KeepOnlyConnectedComponent method) (topobench.transforms.data_manipulations.KeepSelectedDataFields method) (topobench.transforms.data_manipulations.MessagePassingHomophily method) (topobench.transforms.data_manipulations.mp_homophily.MessagePassingHomophily method) (topobench.transforms.data_manipulations.node_degrees.NodeDegrees method) (topobench.transforms.data_manipulations.node_features_to_float.NodeFeaturesToFloat method) (topobench.transforms.data_manipulations.NodeDegrees method) (topobench.transforms.data_manipulations.NodeFeaturesToFloat method) (topobench.transforms.data_manipulations.one_hot_degree_features.OneHotDegreeFeatures method) (topobench.transforms.data_manipulations.OneHotDegreeFeatures method) (topobench.transforms.data_manipulations.redefine_simplicial_neighbourhoods.RedefineSimplicialNeighbourhoods method) (topobench.transforms.data_manipulations.RedefineSimplicialNeighbourhoods method) (topobench.transforms.data_transform.DataTransform method) (topobench.transforms.feature_liftings.Concatenation method) (topobench.transforms.feature_liftings.concatenation.Concatenation method) (topobench.transforms.feature_liftings.Identity method) (topobench.transforms.feature_liftings.identity.Identity method) (topobench.transforms.feature_liftings.projection_sum.ProjectionSum method) (topobench.transforms.feature_liftings.ProjectionSum method) (topobench.transforms.feature_liftings.Set method) (topobench.transforms.feature_liftings.set.Set method) (topobench.transforms.liftings.AbstractLifting method) (topobench.transforms.liftings.base.AbstractLifting method) (topobench.transforms.liftings.graph2cell.discrete_configuration_complex_lifting.DiscreteConfigurationComplexLifting method) (topobench.transforms.liftings.graph2cell.DiscreteConfigurationComplexLifting method) (topobench.transforms.liftings.simplicial2combinatorial.coface_cc_lifting.CofaceCCLifting method) (topobench.transforms.liftings.simplicial2combinatorial.CofaceCCLifting method)

forward_criterion() (topobench.loss.dataset.DatasetLoss.DatasetLoss method) full_state_update (topobench.evaluator.metrics.example.ExampleRegressionMetric attribute) (topobench.evaluator.metrics.ExampleRegressionMetric attribute)

G

generate_configuration_class() (in module topobench.transforms.liftings.graph2cell.discrete_configuration_complex_lifting) generate_membership_vectors() (topobench.nn.backbones.combinatorial.gccn.TopoTune method) (topobench.nn.backbones.combinatorial.gccn_onehasse.TopoTune_OneHasse method) (topobench.nn.backbones.combinatorial.TopoTune method) (topobench.nn.backbones.combinatorial.TopoTune_OneHasse method) (topobench.nn.backbones.TopoTune method) (topobench.nn.backbones.TopoTune_OneHasse method) generate_zero_sparse_connectivity() (in module topobench.data.utils) (in module topobench.data.utils.utils) GeometricShapesDatasetLoader (class in topobench.data.loaders) (class in topobench.data.loaders.pointcloud) (class in topobench.data.loaders.pointcloud.geometric_shapes) get() (topobench.dataloader.dataload_dataset.DataloadDataset method) (topobench.dataloader.DataloadDataset method) get_activation() (in module topobench.nn.backbones.combinatorial.gccn) (in module topobench.nn.backbones.combinatorial.gccn_onehasse) get_combination() (in module topobench.transforms.liftings.graph2hypergraph.kernel_lifting) get_combinatorial_complex_connectivity() (in module topobench.data.utils) (in module topobench.data.utils.utils) get_complex_connectivity() (in module topobench.data.utils) (in module topobench.data.utils.utils) get_data_dir() (topobench.data.loaders.AbstractLoader method) (topobench.data.loaders.base.AbstractLoader method) (topobench.data.loaders.graph.manual_graph_dataset_loader.ManualGraphDatasetLoader method) (topobench.data.loaders.graph.ManualGraphDatasetLoader method) (topobench.data.loaders.graph.modecule_datasets.MoleculeDatasetLoader method) (topobench.data.loaders.graph.MoleculeDatasetLoader method) (topobench.data.loaders.graph.ogbg_datasets.OGBGDatasetLoader method) (topobench.data.loaders.graph.OGBGDatasetLoader method) (topobench.data.loaders.ManualGraphDatasetLoader method) (topobench.data.loaders.MoleculeDatasetLoader method) (topobench.data.loaders.OGBGDatasetLoader method) get_default_metrics() (in module topobench.utils.config_resolvers) get_default_trainer() (in module topobench.utils.config_resolvers) get_default_transform() (in module topobench.utils.config_resolvers) get_feat_kernel() (in module topobench.transforms.liftings.graph2hypergraph.kernel_lifting) get_feature_dis() (in module topobench.nn.backbones.graph.graph_mlp) get_file_id_from_url() (in module topobench.data.utils.io_utils) get_graph_kernel() (in module topobench.transforms.liftings.graph2hypergraph.kernel_lifting)

get_lower_cells() (topobench.transforms.liftings.simplicial2combinatorial.coface_cc_lifting.CofaceCCLifting method) (topobench.transforms.liftings.simplicial2combinatorial.CofaceCCLifting method) get_metric_value() (in module topobench.utils) (in module topobench.utils.utils) get_monitor_metric() (in module topobench.utils.config_resolvers) get_monitor_mode() (in module topobench.utils.config_resolvers) get_nbhd_cache() (topobench.nn.backbones.combinatorial.gccn.TopoTune method) (topobench.nn.backbones.combinatorial.TopoTune method) (topobench.nn.backbones.TopoTune method) get_power_adj() (topobench.loss.model.GraphMLPLoss.GraphMLPLoss method) get_required_lifting() (in module topobench.utils.config_resolvers) get_routes_from_neighborhoods() (in module topobench.data.utils) (in module topobench.data.utils.utils) GNNWrapper (class in topobench.nn.wrappers) (class in topobench.nn.wrappers.graph) (class in topobench.nn.wrappers.graph.gnn_wrapper) Graph2CellLifting (class in topobench.transforms.liftings.graph2cell) (class in topobench.transforms.liftings.graph2cell.base) Graph2CombinatorialLifting (class in topobench.transforms.liftings.graph2combinatorial) (class in topobench.transforms.liftings.graph2combinatorial.base) Graph2HypergraphLifting (class in topobench.transforms.liftings.graph2hypergraph) (class in topobench.transforms.liftings.graph2hypergraph.base) Graph2SimplicialLifting (class in topobench.transforms.liftings.graph2simplicial) (class in topobench.transforms.liftings.graph2simplicial.base) graph_heat_kernel() (in module topobench.transforms.liftings.graph2hypergraph.kernel_lifting) graph_matern_kernel() (in module topobench.transforms.liftings.graph2hypergraph.kernel_lifting) graph_mlp_contrast_loss() (topobench.loss.model.GraphMLPLoss.GraphMLPLoss method) GraphLifting (class in topobench.transforms.liftings) (class in topobench.transforms.liftings.liftings) GraphMLP (class in topobench.nn.backbones) (class in topobench.nn.backbones.graph) (class in topobench.nn.backbones.graph.graph_mlp) GraphMLPLoss (class in topobench.loss.model.GraphMLPLoss) GraphMLPWrapper (class in topobench.nn.wrappers) (class in topobench.nn.wrappers.graph) (class in topobench.nn.wrappers.graph.graph_mlp_wrapper) GraphTriangleInducedCC (class in topobench.transforms.liftings.graph2combinatorial) (class in topobench.transforms.liftings.graph2combinatorial.graph_induced_cc) GroupCombinatorialHomophily (class in topobench.transforms.data_manipulations) (class in topobench.transforms.data_manipulations.group_homophily)

H

HeterophilousGraphDatasetLoader (class in topobench.data.loaders) (class in topobench.data.loaders.graph) (class in topobench.data.loaders.graph.hetero_datasets) higher_is_better (topobench.evaluator.metrics.example.ExampleRegressionMetric attribute) (topobench.evaluator.metrics.ExampleRegressionMetric attribute) Hypergraph2CombinatorialLifting (class in topobench.transforms.liftings.hypergraph2combinatorial) (class in topobench.transforms.liftings.hypergraph2combinatorial.base) HypergraphFormanRicciCurvatureLifting (class in topobench.transforms.liftings.graph2hypergraph) (class in topobench.transforms.liftings.graph2hypergraph.forman_ricci_curvature_lifting) HypergraphKernelLifting (class in topobench.transforms.liftings.graph2hypergraph) (class in topobench.transforms.liftings.graph2hypergraph.kernel_lifting)

HypergraphKHopLifting (class in topobench.transforms.liftings.graph2hypergraph) (class in topobench.transforms.liftings.graph2hypergraph.khop_lifting) HypergraphKNNLifting (class in topobench.transforms.liftings.graph2hypergraph) (class in topobench.transforms.liftings.graph2hypergraph.knn_lifting) HypergraphLifting (class in topobench.transforms.liftings) (class in topobench.transforms.liftings.liftings) HypergraphWrapper (class in topobench.nn.wrappers) (class in topobench.nn.wrappers.hypergraph) (class in topobench.nn.wrappers.hypergraph.hypergraph_wrapper)

I

Identity (class in topobench.transforms.feature_liftings) (class in topobench.transforms.feature_liftings.identity) IdentityGAT (class in topobench.nn.backbones) (class in topobench.nn.backbones.graph) (class in topobench.nn.backbones.graph.identity_gnn) IdentityGCN (class in topobench.nn.backbones) (class in topobench.nn.backbones.graph) (class in topobench.nn.backbones.graph.identity_gnn) IdentityGIN (class in topobench.nn.backbones) (class in topobench.nn.backbones.graph) (class in topobench.nn.backbones.graph.identity_gnn) IdentitySAGE (class in topobench.nn.backbones) (class in topobench.nn.backbones.graph) (class in topobench.nn.backbones.graph.identity_gnn) IdentityTransform (class in topobench.transforms.data_manipulations) (class in topobench.transforms.data_manipulations.identity_transform) infer_in_channels() (in module topobench.utils.config_resolvers) infer_num_cell_dimensions() (in module topobench.utils.config_resolvers) InfereKNNConnectivity (class in topobench.transforms.data_manipulations) (class in topobench.transforms.data_manipulations.infere_knn_connectivity) InfereRadiusConnectivity (class in topobench.transforms.data_manipulations) (class in topobench.transforms.data_manipulations.infere_radius_connectivity) initialize_hydra() (in module topobench), [1] (in module topobench.run)

instantiate_callbacks() (in module topobench.utils) (in module topobench.utils.instantiators) instantiate_loggers() (in module topobench.utils) (in module topobench.utils.instantiators) instantiate_pre_transform() (topobench.data.preprocessor.PreProcessor method) (topobench.data.preprocessor.preprocessor.PreProcessor method) interrank_boundary_index() (in module topobench.nn.backbones.combinatorial.gccn) interrank_expand() (topobench.nn.backbones.combinatorial.gccn.TopoTune method) (topobench.nn.backbones.combinatorial.TopoTune method) (topobench.nn.backbones.TopoTune method) interrank_gnn_forward() (topobench.nn.backbones.combinatorial.gccn.TopoTune method) (topobench.nn.backbones.combinatorial.TopoTune method) (topobench.nn.backbones.TopoTune method) intrarank_expand() (topobench.nn.backbones.combinatorial.gccn.TopoTune method) (topobench.nn.backbones.combinatorial.TopoTune method) (topobench.nn.backbones.TopoTune method) intrarank_gnn_forward() (topobench.nn.backbones.combinatorial.gccn.TopoTune method) (topobench.nn.backbones.combinatorial.TopoTune method) (topobench.nn.backbones.TopoTune method) is_differentiable (topobench.evaluator.metrics.example.ExampleRegressionMetric attribute) (topobench.evaluator.metrics.ExampleRegressionMetric attribute) is_valid() (topobench.dataloader.utils.DomainData method)

J

JumpLinkConv (class in topobench.nn.backbones) (class in topobench.nn.backbones.hypergraph) (class in topobench.nn.backbones.hypergraph.edgnn)

K

k_fold_split() (in module topobench.data.utils.split_utils) KeepOnlyConnectedComponent (class in topobench.transforms.data_manipulations) (class in topobench.transforms.data_manipulations.keep_only_connected_component)

KeepSelectedDataFields (class in topobench.transforms.data_manipulations) (class in topobench.transforms.data_manipulations.keep_selected_data_fields) kmeans() (topobench.transforms.liftings.graph2hypergraph.modularity_maximization_lifting.ModularityMaximizationLifting method) (topobench.transforms.liftings.graph2hypergraph.ModularityMaximizationLifting method)

L

LatentCliqueLifting (class in topobench.transforms.liftings.graph2simplicial) (class in topobench.transforms.liftings.graph2simplicial.latentclique_lifting) len() (topobench.dataloader.dataload_dataset.DataloadDataset method) (topobench.dataloader.DataloadDataset method) lift_features() (topobench.transforms.feature_liftings.Concatenation method) (topobench.transforms.feature_liftings.concatenation.Concatenation method) (topobench.transforms.feature_liftings.projection_sum.ProjectionSum method) (topobench.transforms.feature_liftings.ProjectionSum method) (topobench.transforms.feature_liftings.Set method) (topobench.transforms.feature_liftings.set.Set method) lift_topology() (topobench.transforms.liftings.AbstractLifting method) (topobench.transforms.liftings.base.AbstractLifting method) (topobench.transforms.liftings.graph2cell.CellCycleLifting method) (topobench.transforms.liftings.graph2cell.cycle_lifting.CellCycleLifting method) (topobench.transforms.liftings.graph2cell.discrete_configuration_complex_lifting.DiscreteConfigurationComplexLifting method) (topobench.transforms.liftings.graph2cell.DiscreteConfigurationComplexLifting method) (topobench.transforms.liftings.graph2combinatorial.graph_induced_cc.GraphTriangleInducedCC method) (topobench.transforms.liftings.graph2combinatorial.GraphTriangleInducedCC method) (topobench.transforms.liftings.graph2hypergraph.expander_graph_lifting.ExpanderGraphLifting method) (topobench.transforms.liftings.graph2hypergraph.ExpanderGraphLifting method) (topobench.transforms.liftings.graph2hypergraph.forman_ricci_curvature_lifting.HypergraphFormanRicciCurvatureLifting method) (topobench.transforms.liftings.graph2hypergraph.HypergraphFormanRicciCurvatureLifting method) (topobench.transforms.liftings.graph2hypergraph.HypergraphKernelLifting method) (topobench.transforms.liftings.graph2hypergraph.HypergraphKHopLifting method) (topobench.transforms.liftings.graph2hypergraph.HypergraphKNNLifting method) (topobench.transforms.liftings.graph2hypergraph.kernel_lifting.HypergraphKernelLifting method) (topobench.transforms.liftings.graph2hypergraph.khop_lifting.HypergraphKHopLifting method) (topobench.transforms.liftings.graph2hypergraph.knn_lifting.HypergraphKNNLifting method) (topobench.transforms.liftings.graph2hypergraph.mapper_lifting.MapperLifting method) (topobench.transforms.liftings.graph2hypergraph.MapperLifting method) (topobench.transforms.liftings.graph2hypergraph.modularity_maximization_lifting.ModularityMaximizationLifting method) (topobench.transforms.liftings.graph2hypergraph.ModularityMaximizationLifting method) (topobench.transforms.liftings.graph2simplicial.clique_lifting.SimplicialCliqueLifting method) (topobench.transforms.liftings.graph2simplicial.dnd_lifting.SimplicialDnDLifting method) (topobench.transforms.liftings.graph2simplicial.eccentricity_lifting.SimplicialEccentricityLifting method) (topobench.transforms.liftings.graph2simplicial.graph_induced_lifting.SimplicialGraphInducedLifting method) (topobench.transforms.liftings.graph2simplicial.khop_lifting.SimplicialKHopLifting method) (topobench.transforms.liftings.graph2simplicial.latentclique_lifting.LatentCliqueLifting method) (topobench.transforms.liftings.graph2simplicial.LatentCliqueLifting method) (topobench.transforms.liftings.graph2simplicial.line_lifting.SimplicialLineLifting method) (topobench.transforms.liftings.graph2simplicial.neighborhood_complex_lifting.NeighborhoodComplexLifting method) (topobench.transforms.liftings.graph2simplicial.NeighborhoodComplexLifting method) (topobench.transforms.liftings.graph2simplicial.SimplicialCliqueLifting method) (topobench.transforms.liftings.graph2simplicial.SimplicialDnDLifting method) (topobench.transforms.liftings.graph2simplicial.SimplicialEccentricityLifting method) (topobench.transforms.liftings.graph2simplicial.SimplicialGraphInducedLifting method) (topobench.transforms.liftings.graph2simplicial.SimplicialKHopLifting method) (topobench.transforms.liftings.graph2simplicial.SimplicialLineLifting method) (topobench.transforms.liftings.graph2simplicial.SimplicialVietorisRipsLifting method) (topobench.transforms.liftings.graph2simplicial.vietoris_rips_lifting.SimplicialVietorisRipsLifting method) (topobench.transforms.liftings.hypergraph2combinatorial.universal_strict_lifting.UniversalStrictLifting method) (topobench.transforms.liftings.hypergraph2combinatorial.UniversalStrictLifting method) (topobench.transforms.liftings.pointcloud2hypergraph.mogmst_lifting.MoGMSTLifting method) (topobench.transforms.liftings.pointcloud2hypergraph.MoGMSTLifting method) (topobench.transforms.liftings.pointcloud2hypergraph.pointnet_lifting.PointNetLifting method) (topobench.transforms.liftings.pointcloud2hypergraph.PointNetLifting method) (topobench.transforms.liftings.pointcloud2hypergraph.voronoi_lifting.VoronoiLifting method) (topobench.transforms.liftings.pointcloud2hypergraph.VoronoiLifting method) (topobench.transforms.liftings.pointcloud2simplicial.alpha_complex_lifting.AlphaComplexLifting method) (topobench.transforms.liftings.pointcloud2simplicial.AlphaComplexLifting method) (topobench.transforms.liftings.pointcloud2simplicial.random_flag_complex.RandomFlagComplexLifting method) (topobench.transforms.liftings.pointcloud2simplicial.RandomFlagComplexLifting method) (topobench.transforms.liftings.simplicial2combinatorial.coface_cc_lifting.CofaceCCLifting method) (topobench.transforms.liftings.simplicial2combinatorial.CofaceCCLifting method)

load() (topobench.data.loaders.AbstractLoader method) (topobench.data.loaders.base.AbstractLoader method) (topobench.data.preprocessor.PreProcessor method) (topobench.data.preprocessor.preprocessor.PreProcessor method) load_cell_complex_dataset() (in module topobench.data.utils) (in module topobench.data.utils.utils) load_coauthorship_hypergraph_splits() (in module topobench.data.utils) (in module topobench.data.utils.split_utils) load_dataset() (topobench.data.loaders.AbstractLoader method) (topobench.data.loaders.base.AbstractLoader method) (topobench.data.loaders.CitationHypergraphDatasetLoader method) (topobench.data.loaders.GeometricShapesDatasetLoader method) (topobench.data.loaders.graph.hetero_datasets.HeterophilousGraphDatasetLoader method) (topobench.data.loaders.graph.HeterophilousGraphDatasetLoader method) (topobench.data.loaders.graph.mantra_dataset.MantraSimplicialDatasetLoader method) (topobench.data.loaders.graph.MantraSimplicialDatasetLoader method) (topobench.data.loaders.graph.manual_graph_dataset_loader.ManualGraphDatasetLoader method) (topobench.data.loaders.graph.ManualGraphDatasetLoader method) (topobench.data.loaders.graph.modecule_datasets.MoleculeDatasetLoader method) (topobench.data.loaders.graph.MoleculeDatasetLoader method) (topobench.data.loaders.graph.ogbg_datasets.OGBGDatasetLoader method) (topobench.data.loaders.graph.OGBGDatasetLoader method) (topobench.data.loaders.graph.planetoid_datasets.PlanetoidDatasetLoader method) (topobench.data.loaders.graph.PlanetoidDatasetLoader method) (topobench.data.loaders.graph.tu_datasets.TUDatasetLoader method) (topobench.data.loaders.graph.TUDatasetLoader method) (topobench.data.loaders.graph.us_county_demos_dataset_loader.USCountyDemosDatasetLoader method) (topobench.data.loaders.graph.USCountyDemosDatasetLoader method) (topobench.data.loaders.HeterophilousGraphDatasetLoader method) (topobench.data.loaders.hypergraph.citation_hypergraph_dataset_loader.CitationHypergraphDatasetLoader method) (topobench.data.loaders.hypergraph.CitationHypergraphDatasetLoader method) (topobench.data.loaders.MantraSimplicialDatasetLoader method) (topobench.data.loaders.ManualGraphDatasetLoader method) (topobench.data.loaders.MoleculeDatasetLoader method) (topobench.data.loaders.OGBGDatasetLoader method) (topobench.data.loaders.PlanetoidDatasetLoader method) (topobench.data.loaders.pointcloud.geometric_shapes.GeometricShapesDatasetLoader method) (topobench.data.loaders.pointcloud.GeometricShapesDatasetLoader method) (topobench.data.loaders.simplicial.mantra_dataset_loader.MantraSimplicialDatasetLoader method) (topobench.data.loaders.simplicial.MantraSimplicialDatasetLoader method) (topobench.data.loaders.TUDatasetLoader method) (topobench.data.loaders.USCountyDemosDatasetLoader method) load_dataset_splits() (topobench.data.preprocessor.PreProcessor method) (topobench.data.preprocessor.preprocessor.PreProcessor method) load_hypergraph_pickle_dataset() (in module topobench.data.utils) (in module topobench.data.utils.io_utils) load_inductive_splits() (in module topobench.data.utils) (in module topobench.data.utils.split_utils) load_manual_graph() (in module topobench.data.utils) (in module topobench.data.utils.utils) load_manual_graph_second_structure() (in module topobench.data.utils.utils) load_manual_hypergraph() (in module topobench.data.utils.utils) load_manual_pointcloud() (in module topobench.data.utils.utils) load_manual_points() (in module topobench.data.utils.utils) load_manual_simplicial_complex() (in module topobench.data.utils.utils) load_simplicial_dataset() (in module topobench.data.utils) (in module topobench.data.utils.utils) load_transductive_splits() (in module topobench.data.utils) (in module topobench.data.utils.split_utils) log() (topobench.utils.pylogger.RankedLogger method) (topobench.utils.RankedLogger method) log_hyperparameters() (in module topobench.utils) (in module topobench.utils.logging_utils) log_metrics() (topobench.model.model.TBModel method) (topobench.model.TBModel method)

M

main() (in module topobench.run) make_hash() (in module topobench.data.utils) (in module topobench.data.utils.utils) MantraDataset (class in topobench.data.datasets) (class in topobench.data.datasets.mantra_dataset) MantraSimplicialDatasetLoader (class in topobench.data.loaders) (class in topobench.data.loaders.graph) (class in topobench.data.loaders.graph.mantra_dataset) (class in topobench.data.loaders.simplicial) (class in topobench.data.loaders.simplicial.mantra_dataset_loader) ManualGraphDatasetLoader (class in topobench.data.loaders) (class in topobench.data.loaders.graph) (class in topobench.data.loaders.graph.manual_graph_dataset_loader) MapperCover (class in topobench.transforms.liftings.graph2hypergraph.mapper_lifting) MapperLifting (class in topobench.transforms.liftings.graph2hypergraph) (class in topobench.transforms.liftings.graph2hypergraph.mapper_lifting) maybe_regular_expander() (in module topobench.transforms.liftings.graph2hypergraph.expander_graph_lifting) MeanDegConv (class in topobench.nn.backbones) (class in topobench.nn.backbones.hypergraph) (class in topobench.nn.backbones.hypergraph.edgnn) MessagePassingHomophily (class in topobench.transforms.data_manipulations) (class in topobench.transforms.data_manipulations.mp_homophily) MLP (class in topobench.nn.backbones) Mlp (class in topobench.nn.backbones) (class in topobench.nn.backbones.graph) (class in topobench.nn.backbones.graph.graph_mlp) MLP (class in topobench.nn.backbones.hypergraph) (class in topobench.nn.backbones.hypergraph.edgnn) model_step() (topobench.model.model.TBModel method) (topobench.model.TBModel method) modularity_matrix() (topobench.transforms.liftings.graph2hypergraph.modularity_maximization_lifting.ModularityMaximizationLifting method) (topobench.transforms.liftings.graph2hypergraph.ModularityMaximizationLifting method) ModularityMaximizationLifting (class in topobench.transforms.liftings.graph2hypergraph) (class in topobench.transforms.liftings.graph2hypergraph.modularity_maximization_lifting) module topobench, [1] topobench.callbacks topobench.callbacks.timer_callback topobench.data topobench.data.datasets topobench.data.datasets.citation_hypergaph_dataset topobench.data.datasets.mantra_dataset topobench.data.datasets.us_county_demos_dataset topobench.data.loaders topobench.data.loaders.base topobench.data.loaders.graph topobench.data.loaders.graph.hetero_datasets topobench.data.loaders.graph.mantra_dataset topobench.data.loaders.graph.manual_graph_dataset_loader topobench.data.loaders.graph.modecule_datasets topobench.data.loaders.graph.ogbg_datasets topobench.data.loaders.graph.planetoid_datasets topobench.data.loaders.graph.tu_datasets topobench.data.loaders.graph.us_county_demos_dataset_loader topobench.data.loaders.hypergraph topobench.data.loaders.hypergraph.citation_hypergraph_dataset_loader topobench.data.loaders.pointcloud topobench.data.loaders.pointcloud.geometric_shapes topobench.data.loaders.simplicial topobench.data.loaders.simplicial.mantra_dataset_loader topobench.data.preprocessor topobench.data.preprocessor.preprocessor topobench.data.utils topobench.data.utils.io_utils topobench.data.utils.split_utils topobench.data.utils.utils topobench.dataloader topobench.dataloader.dataload_dataset topobench.dataloader.dataloader topobench.dataloader.utils topobench.evaluator topobench.evaluator.base topobench.evaluator.evaluator topobench.evaluator.metrics topobench.evaluator.metrics.example topobench.loss topobench.loss.base topobench.loss.dataset topobench.loss.dataset.DatasetLoss topobench.loss.loss topobench.loss.model topobench.loss.model.DGMLoss topobench.loss.model.GraphMLPLoss topobench.model topobench.model.model topobench.nn topobench.nn.backbones topobench.nn.backbones.cell topobench.nn.backbones.cell.cccn topobench.nn.backbones.combinatorial topobench.nn.backbones.combinatorial.gccn topobench.nn.backbones.combinatorial.gccn_onehasse topobench.nn.backbones.graph topobench.nn.backbones.graph.graph_mlp topobench.nn.backbones.graph.identity_gnn topobench.nn.backbones.hypergraph topobench.nn.backbones.hypergraph.edgnn topobench.nn.backbones.simplicial topobench.nn.backbones.simplicial.sccnn topobench.nn.encoders topobench.nn.encoders.all_cell_encoder topobench.nn.encoders.base topobench.nn.encoders.dgm_encoder topobench.nn.encoders.kdgm topobench.nn.readouts topobench.nn.readouts.base topobench.nn.readouts.identical topobench.nn.readouts.propagate_signal_down topobench.nn.wrappers topobench.nn.wrappers.base topobench.nn.wrappers.cell topobench.nn.wrappers.cell.can_wrapper topobench.nn.wrappers.cell.cccn_wrapper topobench.nn.wrappers.cell.ccxn_wrapper topobench.nn.wrappers.cell.cwn_wrapper topobench.nn.wrappers.combinatorial topobench.nn.wrappers.combinatorial.tune_wrapper topobench.nn.wrappers.graph topobench.nn.wrappers.graph.gnn_wrapper topobench.nn.wrappers.graph.graph_mlp_wrapper topobench.nn.wrappers.hypergraph topobench.nn.wrappers.hypergraph.hypergraph_wrapper topobench.nn.wrappers.simplicial topobench.nn.wrappers.simplicial.san_wrapper topobench.nn.wrappers.simplicial.sccn_wrapper topobench.nn.wrappers.simplicial.sccnn_wrapper topobench.nn.wrappers.simplicial.scn_wrapper topobench.optimizer topobench.optimizer.base topobench.optimizer.optimizer topobench.run topobench.transforms topobench.transforms.data_manipulations topobench.transforms.data_manipulations.calculate_simplicial_curvature topobench.transforms.data_manipulations.equal_gaus_features topobench.transforms.data_manipulations.group_homophily topobench.transforms.data_manipulations.identity_transform topobench.transforms.data_manipulations.infere_knn_connectivity topobench.transforms.data_manipulations.infere_radius_connectivity topobench.transforms.data_manipulations.keep_only_connected_component topobench.transforms.data_manipulations.keep_selected_data_fields topobench.transforms.data_manipulations.mp_homophily topobench.transforms.data_manipulations.node_degrees topobench.transforms.data_manipulations.node_features_to_float topobench.transforms.data_manipulations.one_hot_degree_features topobench.transforms.data_manipulations.redefine_simplicial_neighbourhoods topobench.transforms.data_transform topobench.transforms.feature_liftings topobench.transforms.feature_liftings.concatenation topobench.transforms.feature_liftings.identity topobench.transforms.feature_liftings.projection_sum topobench.transforms.feature_liftings.set topobench.transforms.liftings topobench.transforms.liftings.base topobench.transforms.liftings.graph2cell topobench.transforms.liftings.graph2cell.base topobench.transforms.liftings.graph2cell.cycle_lifting topobench.transforms.liftings.graph2cell.discrete_configuration_complex_lifting topobench.transforms.liftings.graph2combinatorial topobench.transforms.liftings.graph2combinatorial.base topobench.transforms.liftings.graph2combinatorial.graph_induced_cc topobench.transforms.liftings.graph2hypergraph topobench.transforms.liftings.graph2hypergraph.base topobench.transforms.liftings.graph2hypergraph.expander_graph_lifting topobench.transforms.liftings.graph2hypergraph.forman_ricci_curvature_lifting topobench.transforms.liftings.graph2hypergraph.kernel_lifting topobench.transforms.liftings.graph2hypergraph.khop_lifting topobench.transforms.liftings.graph2hypergraph.knn_lifting topobench.transforms.liftings.graph2hypergraph.mapper_lifting topobench.transforms.liftings.graph2hypergraph.modularity_maximization_lifting topobench.transforms.liftings.graph2simplicial topobench.transforms.liftings.graph2simplicial.base topobench.transforms.liftings.graph2simplicial.clique_lifting topobench.transforms.liftings.graph2simplicial.dnd_lifting topobench.transforms.liftings.graph2simplicial.eccentricity_lifting topobench.transforms.liftings.graph2simplicial.graph_induced_lifting topobench.transforms.liftings.graph2simplicial.khop_lifting topobench.transforms.liftings.graph2simplicial.latentclique_lifting topobench.transforms.liftings.graph2simplicial.line_lifting topobench.transforms.liftings.graph2simplicial.neighborhood_complex_lifting topobench.transforms.liftings.graph2simplicial.vietoris_rips_lifting topobench.transforms.liftings.hypergraph2combinatorial topobench.transforms.liftings.hypergraph2combinatorial.base topobench.transforms.liftings.hypergraph2combinatorial.universal_strict_lifting topobench.transforms.liftings.liftings topobench.transforms.liftings.pointcloud2hypergraph topobench.transforms.liftings.pointcloud2hypergraph.base topobench.transforms.liftings.pointcloud2hypergraph.mogmst_lifting topobench.transforms.liftings.pointcloud2hypergraph.pointnet_lifting topobench.transforms.liftings.pointcloud2hypergraph.voronoi_lifting topobench.transforms.liftings.pointcloud2simplicial topobench.transforms.liftings.pointcloud2simplicial.alpha_complex_lifting topobench.transforms.liftings.pointcloud2simplicial.base topobench.transforms.liftings.pointcloud2simplicial.random_flag_complex topobench.transforms.liftings.simplicial2combinatorial topobench.transforms.liftings.simplicial2combinatorial.base topobench.transforms.liftings.simplicial2combinatorial.coface_cc_lifting topobench.utils topobench.utils.config_resolvers topobench.utils.instantiators topobench.utils.logging_utils topobench.utils.pylogger topobench.utils.rich_utils topobench.utils.utils

MoGMSTLifting (class in topobench.transforms.liftings.pointcloud2hypergraph) (class in topobench.transforms.liftings.pointcloud2hypergraph.mogmst_lifting) MoleculeDatasetLoader (class in topobench.data.loaders) (class in topobench.data.loaders.graph) (class in topobench.data.loaders.graph.modecule_datasets)

N

NeighborhoodComplexLifting (class in topobench.transforms.liftings.graph2simplicial) (class in topobench.transforms.liftings.graph2simplicial.neighborhood_complex_lifting) NodeDegrees (class in topobench.transforms.data_manipulations) (class in topobench.transforms.data_manipulations.node_degrees) NodeFeaturesToFloat (class in topobench.transforms.data_manipulations) (class in topobench.transforms.data_manipulations.node_features_to_float)

nodes_search() (in module topobench.transforms.liftings.graph2simplicial.vietoris_rips_lifting) NoReadOut (class in topobench.nn.readouts) (class in topobench.nn.readouts.identical) normalize_matrix() (topobench.nn.wrappers.SCNWrapper method) (topobench.nn.wrappers.simplicial.scn_wrapper.SCNWrapper method) (topobench.nn.wrappers.simplicial.SCNWrapper method)

O

OGBGDatasetLoader (class in topobench.data.loaders) (class in topobench.data.loaders.graph) (class in topobench.data.loaders.graph.ogbg_datasets) on_test_batch_end() (topobench.callbacks.timer_callback.PipelineTimer method) on_test_batch_start() (topobench.callbacks.timer_callback.PipelineTimer method) on_test_epoch_end() (topobench.callbacks.timer_callback.PipelineTimer method) (topobench.model.model.TBModel method) (topobench.model.TBModel method) on_test_epoch_start() (topobench.callbacks.timer_callback.PipelineTimer method) (topobench.model.model.TBModel method) (topobench.model.TBModel method) on_train_batch_end() (topobench.callbacks.timer_callback.PipelineTimer method) on_train_batch_start() (topobench.callbacks.timer_callback.PipelineTimer method) on_train_end() (topobench.callbacks.timer_callback.PipelineTimer method) on_train_epoch_end() (topobench.callbacks.timer_callback.PipelineTimer method) (topobench.model.model.TBModel method) (topobench.model.TBModel method)

on_train_epoch_start() (topobench.callbacks.timer_callback.PipelineTimer method) (topobench.model.model.TBModel method) (topobench.model.TBModel method) on_val_epoch_start() (topobench.model.model.TBModel method) (topobench.model.TBModel method) on_validation_batch_end() (topobench.callbacks.timer_callback.PipelineTimer method) on_validation_batch_start() (topobench.callbacks.timer_callback.PipelineTimer method) on_validation_epoch_end() (topobench.callbacks.timer_callback.PipelineTimer method) (topobench.model.model.TBModel method) (topobench.model.TBModel method) on_validation_epoch_start() (topobench.callbacks.timer_callback.PipelineTimer method) (topobench.model.model.TBModel method) (topobench.model.TBModel method) one_cell_curvature() (topobench.transforms.data_manipulations.calculate_simplicial_curvature.CalculateSimplicialCurvature method) (topobench.transforms.data_manipulations.CalculateSimplicialCurvature method) OneHotDegreeFeatures (class in topobench.transforms.data_manipulations) (class in topobench.transforms.data_manipulations.one_hot_degree_features)

P

pairwise_euclidean_distances() (in module topobench.nn.encoders.kdgm) pairwise_poincare_distances() (in module topobench.nn.encoders.kdgm) PipelineTimer (class in topobench.callbacks.timer_callback) PlainMLP (class in topobench.nn.backbones) (class in topobench.nn.backbones.hypergraph) (class in topobench.nn.backbones.hypergraph.edgnn) PlanetoidDatasetLoader (class in topobench.data.loaders) (class in topobench.data.loaders.graph) (class in topobench.data.loaders.graph.planetoid_datasets) PointCloud2HypergraphLifting (class in topobench.transforms.liftings.pointcloud2hypergraph) (class in topobench.transforms.liftings.pointcloud2hypergraph.base) PointCloud2SimplicialLifting (class in topobench.transforms.liftings.pointcloud2simplicial) (class in topobench.transforms.liftings.pointcloud2simplicial.base) PointCloudLifting (class in topobench.transforms.liftings) (class in topobench.transforms.liftings.liftings) PointNetLifting (class in topobench.transforms.liftings.pointcloud2hypergraph) (class in topobench.transforms.liftings.pointcloud2hypergraph.pointnet_lifting) PreProcessor (class in topobench.data.preprocessor) (class in topobench.data.preprocessor.preprocessor) print_config_tree() (in module topobench.utils) (in module topobench.utils.rich_utils) process() (topobench.data.datasets.citation_hypergaph_dataset.CitationHypergraphDataset method) (topobench.data.datasets.CitationHypergraphDataset method) (topobench.data.datasets.mantra_dataset.MantraDataset method) (topobench.data.datasets.MantraDataset method) (topobench.data.datasets.us_county_demos_dataset.USCountyDemosDataset method) (topobench.data.datasets.USCountyDemosDataset method) (topobench.data.preprocessor.PreProcessor method) (topobench.data.preprocessor.preprocessor.PreProcessor method)

process_outputs() (topobench.model.model.TBModel method) (topobench.model.TBModel method) processed_dir (topobench.data.datasets.citation_hypergaph_dataset.CitationHypergraphDataset property) (topobench.data.datasets.CitationHypergraphDataset property) (topobench.data.datasets.mantra_dataset.MantraDataset property) (topobench.data.datasets.MantraDataset property) (topobench.data.datasets.us_county_demos_dataset.USCountyDemosDataset property) (topobench.data.datasets.USCountyDemosDataset property) (topobench.data.preprocessor.PreProcessor property) (topobench.data.preprocessor.preprocessor.PreProcessor property) processed_file_names (topobench.data.datasets.citation_hypergaph_dataset.CitationHypergraphDataset property) (topobench.data.datasets.CitationHypergraphDataset property) (topobench.data.datasets.mantra_dataset.MantraDataset property) (topobench.data.datasets.MantraDataset property) (topobench.data.datasets.us_county_demos_dataset.USCountyDemosDataset property) (topobench.data.datasets.USCountyDemosDataset property) (topobench.data.preprocessor.PreProcessor property) (topobench.data.preprocessor.preprocessor.PreProcessor property) ProjectionSum (class in topobench.transforms.feature_liftings) (class in topobench.transforms.feature_liftings.projection_sum) PropagateSignalDown (class in topobench.nn.readouts) (class in topobench.nn.readouts.propagate_signal_down)

R

random_splitting() (in module topobench.data.utils.split_utils) RandomFlagComplexLifting (class in topobench.transforms.liftings.pointcloud2simplicial) (class in topobench.transforms.liftings.pointcloud2simplicial.random_flag_complex) RankedLogger (class in topobench.utils) (class in topobench.utils.pylogger) raw_dir (topobench.data.datasets.citation_hypergaph_dataset.CitationHypergraphDataset property) (topobench.data.datasets.CitationHypergraphDataset property) (topobench.data.datasets.mantra_dataset.MantraDataset property) (topobench.data.datasets.MantraDataset property) (topobench.data.datasets.us_county_demos_dataset.USCountyDemosDataset property) (topobench.data.datasets.USCountyDemosDataset property) RAW_FILE_NAMES (topobench.data.datasets.citation_hypergaph_dataset.CitationHypergraphDataset attribute) raw_file_names (topobench.data.datasets.citation_hypergaph_dataset.CitationHypergraphDataset property) RAW_FILE_NAMES (topobench.data.datasets.CitationHypergraphDataset attribute) raw_file_names (topobench.data.datasets.CitationHypergraphDataset property) RAW_FILE_NAMES (topobench.data.datasets.mantra_dataset.MantraDataset attribute) raw_file_names (topobench.data.datasets.mantra_dataset.MantraDataset property) RAW_FILE_NAMES (topobench.data.datasets.MantraDataset attribute) raw_file_names (topobench.data.datasets.MantraDataset property) RAW_FILE_NAMES (topobench.data.datasets.us_county_demos_dataset.USCountyDemosDataset attribute) raw_file_names (topobench.data.datasets.us_county_demos_dataset.USCountyDemosDataset property) RAW_FILE_NAMES (topobench.data.datasets.USCountyDemosDataset attribute) raw_file_names (topobench.data.datasets.USCountyDemosDataset property) read_ndim_manifolds() (in module topobench.data.utils.io_utils) read_us_county_demos() (in module topobench.data.utils) (in module topobench.data.utils.io_utils) RedefineSimplicialNeighbourhoods (class in topobench.transforms.data_manipulations) (class in topobench.transforms.data_manipulations.redefine_simplicial_neighbourhoods)

rename_pos_to_x() (in module topobench.data.loaders.pointcloud.geometric_shapes) reset() (topobench.evaluator.AbstractEvaluator method) (topobench.evaluator.base.AbstractEvaluator method) (topobench.evaluator.evaluator.TBEvaluator method) (topobench.evaluator.TBEvaluator method) reset_parameters() (topobench.nn.backbones.EDGNN method) (topobench.nn.backbones.EquivSetConv method) (topobench.nn.backbones.hypergraph.EDGNN method) (topobench.nn.backbones.hypergraph.edgnn.EDGNN method) (topobench.nn.backbones.hypergraph.edgnn.EquivSetConv method) (topobench.nn.backbones.hypergraph.edgnn.JumpLinkConv method) (topobench.nn.backbones.hypergraph.edgnn.MeanDegConv method) (topobench.nn.backbones.hypergraph.edgnn.MLP method) (topobench.nn.backbones.hypergraph.edgnn.PlainMLP method) (topobench.nn.backbones.hypergraph.EquivSetConv method) (topobench.nn.backbones.hypergraph.JumpLinkConv method) (topobench.nn.backbones.hypergraph.MeanDegConv method) (topobench.nn.backbones.hypergraph.MLP method) (topobench.nn.backbones.hypergraph.PlainMLP method) (topobench.nn.backbones.JumpLinkConv method) (topobench.nn.backbones.MeanDegConv method) (topobench.nn.backbones.MLP method) (topobench.nn.backbones.PlainMLP method) (topobench.nn.backbones.SCCNNLayer method) (topobench.nn.backbones.simplicial.sccnn.SCCNNLayer method) (topobench.nn.backbones.simplicial.SCCNNLayer method) residual_connection() (topobench.nn.wrappers.AbstractWrapper method) (topobench.nn.wrappers.base.AbstractWrapper method)

S

sample_without_replacement() (topobench.nn.encoders.kdgm.DGM_d method) SANWrapper (class in topobench.nn.wrappers) (class in topobench.nn.wrappers.simplicial) (class in topobench.nn.wrappers.simplicial.san_wrapper) save_transform_parameters() (topobench.data.preprocessor.PreProcessor method) (topobench.data.preprocessor.preprocessor.PreProcessor method) SCCNNCustom (class in topobench.nn.backbones) (class in topobench.nn.backbones.simplicial) (class in topobench.nn.backbones.simplicial.sccnn) SCCNNLayer (class in topobench.nn.backbones) (class in topobench.nn.backbones.simplicial) (class in topobench.nn.backbones.simplicial.sccnn) SCCNNWrapper (class in topobench.nn.wrappers) (class in topobench.nn.wrappers.simplicial) (class in topobench.nn.wrappers.simplicial.sccnn_wrapper) SCCNWrapper (class in topobench.nn.wrappers) (class in topobench.nn.wrappers.simplicial) (class in topobench.nn.wrappers.simplicial.sccn_wrapper) SCNWrapper (class in topobench.nn.wrappers) (class in topobench.nn.wrappers.simplicial) (class in topobench.nn.wrappers.simplicial.scn_wrapper) select_neighborhoods_of_interest() (in module topobench.data.utils) (in module topobench.data.utils.utils) Set (class in topobench.transforms.feature_liftings) (class in topobench.transforms.feature_liftings.set)

set_processed_data_dir() (topobench.data.preprocessor.PreProcessor method) (topobench.data.preprocessor.preprocessor.PreProcessor method) setup() (topobench.model.model.TBModel method) (topobench.model.TBModel method) Simplicial2CombinatorialLifting (class in topobench.transforms.liftings.simplicial2combinatorial) (class in topobench.transforms.liftings.simplicial2combinatorial.base) SimplicialCliqueLifting (class in topobench.transforms.liftings.graph2simplicial) (class in topobench.transforms.liftings.graph2simplicial.clique_lifting) SimplicialDnDLifting (class in topobench.transforms.liftings.graph2simplicial) (class in topobench.transforms.liftings.graph2simplicial.dnd_lifting) SimplicialEccentricityLifting (class in topobench.transforms.liftings.graph2simplicial) (class in topobench.transforms.liftings.graph2simplicial.eccentricity_lifting) SimplicialGraphInducedLifting (class in topobench.transforms.liftings.graph2simplicial) (class in topobench.transforms.liftings.graph2simplicial.graph_induced_lifting) SimplicialKHopLifting (class in topobench.transforms.liftings.graph2simplicial) (class in topobench.transforms.liftings.graph2simplicial.khop_lifting) SimplicialLifting (class in topobench.transforms.liftings) (class in topobench.transforms.liftings.liftings) SimplicialLineLifting (class in topobench.transforms.liftings.graph2simplicial) (class in topobench.transforms.liftings.graph2simplicial.line_lifting) SimplicialVietorisRipsLifting (class in topobench.transforms.liftings.graph2simplicial) (class in topobench.transforms.liftings.graph2simplicial.vietoris_rips_lifting) state_dict() (topobench.dataloader.dataloader.TBDataloader method) (topobench.dataloader.TBDataloader method) sum_squared_error (topobench.evaluator.metrics.example.ExampleRegressionMetric attribute) (topobench.evaluator.metrics.ExampleRegressionMetric attribute)

T

task_wrapper() (in module topobench.utils) (in module topobench.utils.utils) TBDataloader (class in topobench.dataloader) (class in topobench.dataloader.dataloader) TBEvaluator (class in topobench.evaluator) (class in topobench.evaluator.evaluator) TBLoss (class in topobench.loss) (class in topobench.loss.loss) TBModel (class in topobench.model) (class in topobench.model.model) TBOptimizer (class in topobench.optimizer) (class in topobench.optimizer.optimizer) teardown() (topobench.dataloader.dataloader.TBDataloader method) (topobench.dataloader.TBDataloader method) test_dataloader() (topobench.dataloader.dataloader.TBDataloader method) (topobench.dataloader.TBDataloader method) test_step() (topobench.model.model.TBModel method) (topobench.model.TBModel method) to_data_list() (in module topobench.dataloader.utils) topobench module, [1] topobench.callbacks module topobench.callbacks.timer_callback module topobench.data module topobench.data.datasets module topobench.data.datasets.citation_hypergaph_dataset module topobench.data.datasets.mantra_dataset module topobench.data.datasets.us_county_demos_dataset module topobench.data.loaders module topobench.data.loaders.base module topobench.data.loaders.graph module topobench.data.loaders.graph.hetero_datasets module topobench.data.loaders.graph.mantra_dataset module topobench.data.loaders.graph.manual_graph_dataset_loader module topobench.data.loaders.graph.modecule_datasets module topobench.data.loaders.graph.ogbg_datasets module topobench.data.loaders.graph.planetoid_datasets module topobench.data.loaders.graph.tu_datasets module topobench.data.loaders.graph.us_county_demos_dataset_loader module topobench.data.loaders.hypergraph module topobench.data.loaders.hypergraph.citation_hypergraph_dataset_loader module topobench.data.loaders.pointcloud module topobench.data.loaders.pointcloud.geometric_shapes module topobench.data.loaders.simplicial module topobench.data.loaders.simplicial.mantra_dataset_loader module topobench.data.preprocessor module topobench.data.preprocessor.preprocessor module topobench.data.utils module topobench.data.utils.io_utils module topobench.data.utils.split_utils module topobench.data.utils.utils module topobench.dataloader module topobench.dataloader.dataload_dataset module topobench.dataloader.dataloader module topobench.dataloader.utils module topobench.evaluator module topobench.evaluator.base module topobench.evaluator.evaluator module topobench.evaluator.metrics module topobench.evaluator.metrics.example module topobench.loss module topobench.loss.base module topobench.loss.dataset module topobench.loss.dataset.DatasetLoss module topobench.loss.loss module topobench.loss.model module topobench.loss.model.DGMLoss module topobench.loss.model.GraphMLPLoss module topobench.model module topobench.model.model module topobench.nn module topobench.nn.backbones module topobench.nn.backbones.cell module topobench.nn.backbones.cell.cccn module topobench.nn.backbones.combinatorial module topobench.nn.backbones.combinatorial.gccn module topobench.nn.backbones.combinatorial.gccn_onehasse module topobench.nn.backbones.graph module topobench.nn.backbones.graph.graph_mlp module topobench.nn.backbones.graph.identity_gnn module topobench.nn.backbones.hypergraph module topobench.nn.backbones.hypergraph.edgnn module topobench.nn.backbones.simplicial module topobench.nn.backbones.simplicial.sccnn module topobench.nn.encoders module topobench.nn.encoders.all_cell_encoder module topobench.nn.encoders.base module topobench.nn.encoders.dgm_encoder module topobench.nn.encoders.kdgm module topobench.nn.readouts module topobench.nn.readouts.base module topobench.nn.readouts.identical module topobench.nn.readouts.propagate_signal_down module topobench.nn.wrappers module topobench.nn.wrappers.base module topobench.nn.wrappers.cell module topobench.nn.wrappers.cell.can_wrapper module topobench.nn.wrappers.cell.cccn_wrapper module topobench.nn.wrappers.cell.ccxn_wrapper module topobench.nn.wrappers.cell.cwn_wrapper module topobench.nn.wrappers.combinatorial module topobench.nn.wrappers.combinatorial.tune_wrapper module topobench.nn.wrappers.graph module topobench.nn.wrappers.graph.gnn_wrapper module topobench.nn.wrappers.graph.graph_mlp_wrapper module

topobench.nn.wrappers.hypergraph module topobench.nn.wrappers.hypergraph.hypergraph_wrapper module topobench.nn.wrappers.simplicial module topobench.nn.wrappers.simplicial.san_wrapper module topobench.nn.wrappers.simplicial.sccn_wrapper module topobench.nn.wrappers.simplicial.sccnn_wrapper module topobench.nn.wrappers.simplicial.scn_wrapper module topobench.optimizer module topobench.optimizer.base module topobench.optimizer.optimizer module topobench.run module topobench.transforms module topobench.transforms.data_manipulations module topobench.transforms.data_manipulations.calculate_simplicial_curvature module topobench.transforms.data_manipulations.equal_gaus_features module topobench.transforms.data_manipulations.group_homophily module topobench.transforms.data_manipulations.identity_transform module topobench.transforms.data_manipulations.infere_knn_connectivity module topobench.transforms.data_manipulations.infere_radius_connectivity module topobench.transforms.data_manipulations.keep_only_connected_component module topobench.transforms.data_manipulations.keep_selected_data_fields module topobench.transforms.data_manipulations.mp_homophily module topobench.transforms.data_manipulations.node_degrees module topobench.transforms.data_manipulations.node_features_to_float module topobench.transforms.data_manipulations.one_hot_degree_features module topobench.transforms.data_manipulations.redefine_simplicial_neighbourhoods module topobench.transforms.data_transform module topobench.transforms.feature_liftings module topobench.transforms.feature_liftings.concatenation module topobench.transforms.feature_liftings.identity module topobench.transforms.feature_liftings.projection_sum module topobench.transforms.feature_liftings.set module topobench.transforms.liftings module topobench.transforms.liftings.base module topobench.transforms.liftings.graph2cell module topobench.transforms.liftings.graph2cell.base module topobench.transforms.liftings.graph2cell.cycle_lifting module topobench.transforms.liftings.graph2cell.discrete_configuration_complex_lifting module topobench.transforms.liftings.graph2combinatorial module topobench.transforms.liftings.graph2combinatorial.base module topobench.transforms.liftings.graph2combinatorial.graph_induced_cc module topobench.transforms.liftings.graph2hypergraph module topobench.transforms.liftings.graph2hypergraph.base module topobench.transforms.liftings.graph2hypergraph.expander_graph_lifting module topobench.transforms.liftings.graph2hypergraph.forman_ricci_curvature_lifting module topobench.transforms.liftings.graph2hypergraph.kernel_lifting module topobench.transforms.liftings.graph2hypergraph.khop_lifting module topobench.transforms.liftings.graph2hypergraph.knn_lifting module topobench.transforms.liftings.graph2hypergraph.mapper_lifting module topobench.transforms.liftings.graph2hypergraph.modularity_maximization_lifting module topobench.transforms.liftings.graph2simplicial module topobench.transforms.liftings.graph2simplicial.base module topobench.transforms.liftings.graph2simplicial.clique_lifting module topobench.transforms.liftings.graph2simplicial.dnd_lifting module topobench.transforms.liftings.graph2simplicial.eccentricity_lifting module topobench.transforms.liftings.graph2simplicial.graph_induced_lifting module topobench.transforms.liftings.graph2simplicial.khop_lifting module topobench.transforms.liftings.graph2simplicial.latentclique_lifting module topobench.transforms.liftings.graph2simplicial.line_lifting module topobench.transforms.liftings.graph2simplicial.neighborhood_complex_lifting module topobench.transforms.liftings.graph2simplicial.vietoris_rips_lifting module topobench.transforms.liftings.hypergraph2combinatorial module topobench.transforms.liftings.hypergraph2combinatorial.base module topobench.transforms.liftings.hypergraph2combinatorial.universal_strict_lifting module topobench.transforms.liftings.liftings module topobench.transforms.liftings.pointcloud2hypergraph module topobench.transforms.liftings.pointcloud2hypergraph.base module topobench.transforms.liftings.pointcloud2hypergraph.mogmst_lifting module topobench.transforms.liftings.pointcloud2hypergraph.pointnet_lifting module topobench.transforms.liftings.pointcloud2hypergraph.voronoi_lifting module topobench.transforms.liftings.pointcloud2simplicial module topobench.transforms.liftings.pointcloud2simplicial.alpha_complex_lifting module topobench.transforms.liftings.pointcloud2simplicial.base module topobench.transforms.liftings.pointcloud2simplicial.random_flag_complex module topobench.transforms.liftings.simplicial2combinatorial module topobench.transforms.liftings.simplicial2combinatorial.base module topobench.transforms.liftings.simplicial2combinatorial.coface_cc_lifting module topobench.utils module topobench.utils.config_resolvers module topobench.utils.instantiators module topobench.utils.logging_utils module topobench.utils.pylogger module topobench.utils.rich_utils module topobench.utils.utils module TopoTune (class in topobench.nn.backbones) (class in topobench.nn.backbones.combinatorial) (class in topobench.nn.backbones.combinatorial.gccn) TopoTune_OneHasse (class in topobench.nn.backbones) (class in topobench.nn.backbones.combinatorial) (class in topobench.nn.backbones.combinatorial.gccn_onehasse) total (topobench.evaluator.metrics.example.ExampleRegressionMetric attribute) (topobench.evaluator.metrics.ExampleRegressionMetric attribute) train_dataloader() (topobench.dataloader.dataloader.TBDataloader method) (topobench.dataloader.TBDataloader method) training_step() (topobench.model.model.TBModel method) (topobench.model.TBModel method) TUDatasetLoader (class in topobench.data.loaders) (class in topobench.data.loaders.graph) (class in topobench.data.loaders.graph.tu_datasets) TuneWrapper (class in topobench.nn.wrappers) (class in topobench.nn.wrappers.combinatorial) (class in topobench.nn.wrappers.combinatorial.tune_wrapper) two_cell_curvature() (topobench.transforms.data_manipulations.calculate_simplicial_curvature.CalculateSimplicialCurvature method) (topobench.transforms.data_manipulations.CalculateSimplicialCurvature method)

U

UniversalStrictLifting (class in topobench.transforms.liftings.hypergraph2combinatorial) (class in topobench.transforms.liftings.hypergraph2combinatorial.universal_strict_lifting) update() (topobench.evaluator.AbstractEvaluator method) (topobench.evaluator.base.AbstractEvaluator method) (topobench.evaluator.evaluator.TBEvaluator method) (topobench.evaluator.metrics.example.ExampleRegressionMetric method) (topobench.evaluator.metrics.ExampleRegressionMetric method) (topobench.evaluator.TBEvaluator method) (topobench.nn.backbones.SCCNNLayer method) (topobench.nn.backbones.simplicial.sccnn.SCCNNLayer method) (topobench.nn.backbones.simplicial.SCCNNLayer method)

URLS (topobench.data.datasets.citation_hypergaph_dataset.CitationHypergraphDataset attribute) (topobench.data.datasets.CitationHypergraphDataset attribute) (topobench.data.datasets.mantra_dataset.MantraDataset attribute) (topobench.data.datasets.MantraDataset attribute) (topobench.data.datasets.us_county_demos_dataset.USCountyDemosDataset attribute) (topobench.data.datasets.USCountyDemosDataset attribute) USCountyDemosDataset (class in topobench.data.datasets) (class in topobench.data.datasets.us_county_demos_dataset) USCountyDemosDatasetLoader (class in topobench.data.loaders) (class in topobench.data.loaders.graph) (class in topobench.data.loaders.graph.us_county_demos_dataset_loader)

V

val_dataloader() (topobench.dataloader.dataloader.TBDataloader method) (topobench.dataloader.TBDataloader method) validation_step() (topobench.model.model.TBModel method) (topobench.model.TBModel method)

VoronoiLifting (class in topobench.transforms.liftings.pointcloud2hypergraph) (class in topobench.transforms.liftings.pointcloud2hypergraph.voronoi_lifting)

Z

zero_cell_curvature() (topobench.transforms.data_manipulations.calculate_simplicial_curvature.CalculateSimplicialCurvature method) (topobench.transforms.data_manipulations.CalculateSimplicialCurvature method)